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L3_114_000G1_scaffold_242

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_242_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(622..915)
DNA (294bp) protein (98aa)
Uncharacterized protein n=2 Tax=Bifidobacterium bifidum RepID=E4VBK8_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:ERI82530.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
moxR; methanol dehydrogenase regulator
L3_114_000G1_scaffold_242_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1026..1784)
DNA (759bp) protein (253aa)
Putative beta-lactamase (Class A) n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMJ0_BIFBS
beta-lactamase (class A)
Putative beta-lactamase (Class A) {ECO:0000313|EMBL:ADO53729.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1981..2274)
DNA (294bp) protein (98aa)
10 kDa chaperonin n=9 Tax=Bifidobacterium RepID=E3EMJ1_BIFBS
groS; chaperonin
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2450..3805)
DNA (1356bp) protein (452aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HBA9_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE51331.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_114_000G1_scaffold_242_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3830..4564)
DNA (735bp) protein (245aa)
rimJ; ribosomal-protein-alanine acetyl transferase (EC:2.3.1.128)
Ribosomal-protein-S5-alanine acetyltransferase {ECO:0000313|EMBL:KFI43899.1}; EC=2.3.1.128 {ECO:0000313|EMBL:KFI43899.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Ribosomal-protein-S5-alanine acetyltransferase n=5 Tax=Bifidobacterium RepID=E4NZ86_BIFBP
L3_114_000G1_scaffold_242_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4587..5279
DNA (693bp) protein (231aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=K2I8R7_BIFBI
hypothetical protein
L3_114_000G1_scaffold_242_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5409..5627
DNA (219bp) protein (73aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=R6GF75_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53734.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

5779..6438
DNA (660bp) protein (220aa)
SAF domain protein n=2 Tax=Bifidobacterium bifidum RepID=U2CES2_BIFBI
hypothetical protein
SAF domain protein {ECO:0000313|EMBL:EFR50966.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_114_000G1_scaffold_242_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6540..6794)
DNA (255bp) protein (85aa)
Uncharacterized protein n=4 Tax=Bifidobacterium RepID=R6GS72_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43903.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_114_000G1_scaffold_242_10
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6791..10408)
DNA (3618bp) protein (1206aa)
DNA and RNA helicase related protein n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZ91_BIFBP
DNA and RNA helicase-like protein
Superfamily I DNA and RNA helicase, helicase subunit {ECO:0000313|EMBL:AFL05159.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_000G1_scaffold_242_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(10417..12078)
DNA (1662bp) protein (554aa)
FHA domain protein n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CD99_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43905.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
FHA domain-containing protein
L3_114_000G1_scaffold_242_12
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12243..12371)
DNA (129bp) protein (43aa)
Uncharacterized protein n=2 Tax=Bifidobacterium RepID=R6GI67_9BIFI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO53739.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_13
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12371..12754)
DNA (384bp) protein (128aa)
50S ribosomal protein L7/L12 n=6 Tax=Bifidobacterium RepID=E3EMK1_BIFBS
rplL; 50S ribosomal protein L7/L12
50S ribosomal protein L7/L12 {ECO:0000256|HAMAP-Rule:MF_00368}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_000G1_scaffold_242_14
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(12854..13375)
DNA (522bp) protein (174aa)
50S ribosomal protein L10 n=7 Tax=Bifidobacterium RepID=E4NZ94_BIFBP
rplJ; 50S ribosomal protein L10
50S ribosomal protein L10 {ECO:0000256|HAMAP-Rule:MF_00362, ECO:0000256|RuleBase:RU003636}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_000G1_scaffold_242_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(13583..14602)
DNA (1020bp) protein (340aa)
Putative GDSL-like Lipase/Acylhydrolase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EMK3_BIFBS
putative O-antigen related protein
Putative GDSL-like Lipase/Acylhydrolase {ECO:0000313|EMBL:ADO53742.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14957..20416)
DNA (5460bp) protein (1820aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJV2_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:KFI43909.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
hypothetical protein
L3_114_000G1_scaffold_242_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20577..20801)
DNA (225bp) protein (75aa)
Uncharacterized protein n=3 Tax=Bifidobacterium bifidum RepID=E4VBJ3_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI43910.1}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
L3_114_000G1_scaffold_242_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20949..22343)
DNA (1395bp) protein (465aa)
Guanine-hypoxanthine permease n=7 Tax=Bifidobacterium RepID=E3EMK6_BIFBS
xanthine/uracil permease family protein
Putative permease {ECO:0000313|EMBL:ERI82513.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98794.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
L3_114_000G1_scaffold_242_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

22452..23471
DNA (1020bp) protein (340aa)
Uncharacterized protein n=5 Tax=Bifidobacterium RepID=I3WJV6_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR50956.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
hypothetical protein
L3_114_000G1_scaffold_242_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23765..24544)
DNA (780bp) protein (260aa)
stB; phosphate ABC transporter ATP-binding protein (EC:3.6.3.27)
Phosphate import ATP-binding protein PstB {ECO:0000256|HAMAP-Rule:MF_01702}; EC=3.6.3.27 {ECO:0000256|HAMAP-Rule:MF_01702};; ABC phosphate transporter {ECO:0000256|HAMAP-Rule:MF_01702}; Phosphate-transporting ATPase {ECO:0000256|HAMAP-Rule:MF_01702}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Beta-glucosides-specific IIA component n=8 Tax=Bifidobacterium RepID=E3EMK9_BIFBS
L3_114_000G1_scaffold_242_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24584..25630)
DNA (1047bp) protein (349aa)
Phosphate ABC transporter, permease protein n=5 Tax=Bifidobacterium bifidum RepID=I3WJV8_BIFBI
pstA; phosphate ABC transporter permease
Phosphate ABC transporter permease {ECO:0000313|EMBL:EKF15730.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_000G1_scaffold_242_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25627..26604)
DNA (978bp) protein (326aa)
Phosphate transport system permease protein n=8 Tax=Bifidobacterium RepID=E3EML1_BIFBS
pstC; phosphate ABC transporter permease
Phosphate ABC transporter permease {ECO:0000313|EMBL:EKF15731.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_000G1_scaffold_242_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26733..27863)
DNA (1131bp) protein (377aa)
pstS; phosphate-binding protein PstS (EC:3.1.3.1)
Phosphate-binding protein PstS n=2 Tax=Bifidobacterium bifidum RepID=E4VBI7_BIFBI
Phosphate-binding protein PstS {ECO:0000256|PIRNR:PIRNR002756}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_114_000G1_scaffold_242_24
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28110..28814)
DNA (705bp) protein (235aa)
Two-component response regulator regX n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3EML3_BIFBS
regX; two-component response regulator regX
Two-component response regulator regX {ECO:0000313|EMBL:ADO53752.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28967..30322)
DNA (1356bp) protein (452aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
senX; sensor-like histidine kinase (EC:2.7.13.3)
Sensor-like histidine kinase n=2 Tax=Bifidobacterium bifidum RepID=K2HWD0_BIFBI
L3_114_000G1_scaffold_242_26
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(30511..31218)
DNA (708bp) protein (236aa)
5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 1 {ECO:0000256|SAAS:SAAS00035231}; EC=3.2.2.9 {ECO:0000256|SAAS:SAAS00035196};; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase {ECO:0000256|SAAS:SAAS00035261}; 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2 {ECO:0000256|SAAS:SAAS00035188}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
pfs; 5'-methylthioadenosine nucleosidase (EC:3.2.2.9)
MTA/SAH nucleosidase n=1 Tax=Bifidobacterium bifidum ATCC 29521 = JCM 1255 RepID=U2CD84_BIFBI
L3_114_000G1_scaffold_242_27
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31266..32504)
DNA (1239bp) protein (413aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
AroG1 3-deoxy-7-phosphoheptulonate synthase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NZI2_BIFBP
3-deoxy-7-phosphoheptulonate synthase {ECO:0000313|EMBL:ADO53755.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_242_28
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33147..33752
DNA (606bp) protein (202aa)
Transcriptional regulator, ArsR family n=3 Tax=Bifidobacterium RepID=E4VBI2_BIFBI
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:ERI82503.1}; Uncharacterized protein {ECO:0000313|EMBL:BAQ98805.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
transcriptional regulator
L3_114_000G1_scaffold_242_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33874..35256
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJW6_BIFBI
Putative transport protein {ECO:0000313|EMBL:BAQ98806.1}; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
hypothetical protein
L3_114_000G1_scaffold_242_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(35402..36532)
DNA (1131bp) protein (377aa)
3-deoxy-7-phosphoheptulonate synthase (EC:2.5.1.54)
Phospho-2-dehydro-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; EC=2.5.1.54 {ECO:0000256|PIRNR:PIRNR001361};; 3-deoxy-D-arabino-heptulosonate 7-phosphate synthase {ECO:0000256|PIRNR:PIRNR001361}; DAHP synthase {ECO:0000256|PIRNR:PIRNR001361}; Phospho-2-keto-3-deoxyheptonate aldolase {ECO:0000256|PIRNR:PIRNR001361}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
Phospho-2-dehydro-3-deoxyheptonate aldolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WJW7_BIFBI
Displaying items 1-30 of 71 in total

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