ggKbase home page

L3_114_000G1_scaffold_290

Search features with annotation key words

Displaying items 1-30 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_290_1
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

344..1975
DNA (1632bp) protein (544aa)
histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
Sensor protein dcuS n=2 Tax=Citrobacter RepID=C1MFQ5_9ENTR
L3_114_000G1_scaffold_290_2
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1972..2691
DNA (720bp) protein (240aa)
Transcriptional regulatory protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8E3_SHIFL
Transcriptional regulatory protein {ECO:0000256|PIRNR:PIRNR006171}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
transcriptional regulator
L3_114_000G1_scaffold_290_3
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3442..4782
DNA (1341bp) protein (447aa)
Anaerobic C4-dicarboxylate transporter n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKJ5_9ENTR
Anaerobic C4-dicarboxylate transporter {ECO:0000256|PIRNR:PIRNR004539}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
C4-dicarboxylate transporter
L3_114_000G1_scaffold_290_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4878..6524
DNA (1647bp) protein (549aa)
Fumarate hydratase class I, anaerobic n=2 Tax=Citrobacter RepID=R8VNV7_9ENTR
Fumarate hydratase {ECO:0000313|EMBL:KKC64271.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
fumarate hydratase
L3_114_000G1_scaffold_290_5
Citrobacter werkmanii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6684..7316
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKJ7_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:GAL46876.1}; TaxID=1114921 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter werkmanii NBRC 105721.;"
hypothetical protein
L3_114_000G1_scaffold_290_6
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7532..9799
DNA (2268bp) protein (756aa)
arginine decarboxylase (EC:4.1.1.19)
Biodegradative arginine decarboxylase n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SB45_CITFR
Biodegradative arginine decarboxylase {ECO:0000313|EMBL:ETX65949.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L3_114_000G1_scaffold_290_7
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10113..10874
DNA (762bp) protein (254aa)
Transcriptional regulator, AraC family n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKK0_9ENTR
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFE05426.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
transcriptional regulator
L3_114_000G1_scaffold_290_8
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11002..12339
DNA (1338bp) protein (446aa)
Arginine/agmatine antiporter n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8F1_SHIFL
Arginine/agmatine antiporter {ECO:0000313|EMBL:CEJ67511.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
arginine:agmatin antiporter
L3_114_000G1_scaffold_290_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12476..14113
DNA (1638bp) protein (546aa)
Phosphoethanolamine transferase eptA n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFP3_9ENTR
hydrolase
Hydrolase {ECO:0000313|EMBL:AHY11500.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_114_000G1_scaffold_290_10
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14118..14786
DNA (669bp) protein (223aa)
Transcriptional regulatory protein BasR n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SB41_CITFR
Transcriptional regulatory protein BasR {ECO:0000313|EMBL:KDF10542.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
transcriptional regulator
L3_114_000G1_scaffold_290_11
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14787..15869
DNA (1083bp) protein (361aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
Sensor protein BasS/PmrB n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3BK36_CITFR
sensor protein BasS/PmrB
L3_114_000G1_scaffold_290_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15863..15952)
DNA (90bp) protein (30aa)
Uncharacterized protein n=3 Tax=Citrobacter RepID=J1G410_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:ETX71792.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
membrane protein
L3_114_000G1_scaffold_290_13
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16110..17612)
DNA (1503bp) protein (501aa)
Proline/glycine betaine transporter n=2 Tax=Citrobacter RepID=K8QMM7_CITFR
Glycine/betaine ABC transporter {ECO:0000313|EMBL:KJC03655.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
glycine/betaine ABC transporter
L3_114_000G1_scaffold_290_14
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18312..19310
DNA (999bp) protein (333aa)
2-keto-3-deoxygluconate permease n=1 Tax=Citrobacter sp. KTE32 RepID=R8VNU1_9ENTR
2-keto-3-deoxygluconate permease {ECO:0000256|HAMAP-Rule:MF_00070}; Short=KDG permease {ECO:0000256|HAMAP-Rule:MF_00070};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
2-keto-3-deoxygluconate permease
L3_114_000G1_scaffold_290_15
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19337..20230)
DNA (894bp) protein (298aa)
Uncharacterized protein n=2 Tax=Citrobacter RepID=R8WIJ0_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KKC65435.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_114_000G1_scaffold_290_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20227..22581)
DNA (2355bp) protein (785aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE32 RepID=R8VPT3_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:KDF10536.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
hypothetical protein
L3_114_000G1_scaffold_290_17
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23135..23470
DNA (336bp) protein (112aa)
Uncharacterized protein n=10 Tax=Citrobacter RepID=A8AMX6_CITK8
Uncharacterized protein {ECO:0000313|EMBL:KEY51642.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
hypothetical protein
L3_114_000G1_scaffold_290_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23588..24037
DNA (450bp) protein (150aa)
Protein phnB n=6 Tax=Citrobacter RepID=G9SB32_CITFR
Protein phnB {ECO:0000313|EMBL:ETX71786.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
hypothetical protein
L3_114_000G1_scaffold_290_19
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24170..24958
DNA (789bp) protein (263aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
Phosphonate ABC transporter, ATP-binding protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6G8G2_SHIFL
phosphonate ABC transporter ATP-binding protein
L3_114_000G1_scaffold_290_20
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24982..25998
DNA (1017bp) protein (339aa)
Phosphonate ABC transporter, periplasmic phosphonate binding protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFN3_9ENTR
Alkylphosphonate ABC transporter substrate-binding protein {ECO:0000313|EMBL:KJC03650.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
alkylphosphonate ABC transporter substrate-binding protein
L3_114_000G1_scaffold_290_21
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26110..26889
DNA (780bp) protein (260aa)
Phosphonate ABC transporter, permease protein PhnE n=3 Tax=Enterobacteriaceae RepID=I6G8G6_SHIFL
Phosphonate ABC transporter permease protein phnE (TC 3.A.1.9.1) {ECO:0000313|EMBL:CEJ67523.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
phosphonate ABC transporter permease
L3_114_000G1_scaffold_290_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26910..27635
DNA (726bp) protein (242aa)
Phosphonate metabolism transcriptional regulator PhnF n=1 Tax=Citrobacter sp. KTE151 RepID=R8WJF0_9ENTR
Phosphonate metabolism transcriptional regulator PhnF {ECO:0000313|EMBL:KDF10530.1}; TaxID=1439318 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii MGH 56.;"
phosphonate metabolism transcriptional regulator PhnF
L3_114_000G1_scaffold_290_23
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27636..28088
DNA (453bp) protein (151aa)
Protein phnG n=1 Tax=Citrobacter sp. KTE151 RepID=R8WIG7_9ENTR
Protein phnG {ECO:0000313|EMBL:EOQ44705.1}; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
phosphonate C-P lyase
L3_114_000G1_scaffold_290_24
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28085..28681
DNA (597bp) protein (199aa)
Protein phnH n=1 Tax=Citrobacter sp. 30_2 RepID=C1MFM9_9ENTR
Protein phnH {ECO:0000313|EMBL:ETX65931.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
phnH; carbon-phosphorus lyase complex subunit
L3_114_000G1_scaffold_290_25
Citrobacter sp. MGH 55, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28681..29748
DNA (1068bp) protein (356aa)
Carbon-phosphorus lyase complex subunit PhnI n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DSE6_CITFR
Protein phnI {ECO:0000313|EMBL:KDF10451.1}; TaxID=1439319 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. MGH 55.;"
hypothetical protein
L3_114_000G1_scaffold_290_26
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29738..30586
DNA (849bp) protein (283aa)
PhnJ protein n=3 Tax=Citrobacter RepID=J0M054_9ENTR
Protein phnJ {ECO:0000313|EMBL:KEL78225.1}; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
hypothetical protein
L3_114_000G1_scaffold_290_27
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

30583..31341
DNA (759bp) protein (253aa)
Phosphonate transport ATP-binding protein PhnK n=5 Tax=Citrobacter RepID=C1MFM6_9ENTR
Phosphonate C-P lyase system protein PhnK {ECO:0000313|EMBL:KJC06433.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
phnK; phosphonate C-P lyase system protein PhnK
L3_114_000G1_scaffold_290_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31449..32129
DNA (681bp) protein (227aa)
Phosphonate transport ATP-binding protein PhnL n=2 Tax=Citrobacter RepID=C1MFM5_9ENTR
Phosphonate transport ATP-binding protein PhnL {ECO:0000313|EMBL:ETX66063.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
phosphonate ABC transporter ATP-binding protein
L3_114_000G1_scaffold_290_29
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32126..33262
DNA (1137bp) protein (379aa)
Phosphonate metabolism protein PhnM n=1 Tax=Citrobacter sp. KTE32 RepID=R8VNS9_9ENTR
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:ETX66062.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
phosphonate metabolism protein PhnM
L3_114_000G1_scaffold_290_30
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33265..33810
DNA (546bp) protein (182aa)
Ribose 1,5-bisphosphate phosphokinase PhnN {ECO:0000256|HAMAP-Rule:MF_00836}; EC=2.7.4.23 {ECO:0000256|HAMAP-Rule:MF_00836};; Ribose 1,5-bisphosphokinase {ECO:0000256|HAMAP-Rule:MF_00836}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
Ribose 1,5-bisphosphate phosphokinase PhnN n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BKM3_9ENTR
ribose-phosphate pyrophosphokinase
Displaying items 1-30 of 77 in total

View Taxonomy