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L3_114_000G1_scaffold_402

Search features with annotation key words

Displaying items 1-30 of 69 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_402_1
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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190..1008
DNA (819bp) protein (273aa)
Helix-turn-helix n=1 Tax=Ruminococcus torques L2-14 RepID=D4M1Z5_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CBL25257.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000G1_scaffold_402_2
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1054..1872)
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6SGA1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC45647.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
L3_114_000G1_scaffold_402_3
Clostridium sp. CAG:58, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2008..2331
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:58 RepID=R6RRF7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC45646.1}; TaxID=1262824 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:58.;"
helix-turn-helix domain-containing protein
L3_114_000G1_scaffold_402_4
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3501..4238
DNA (738bp) protein (246aa)
Uncharacterized protein n=8 Tax=Clostridium RepID=A8RMR9_9CLOT
FeS assembly ATPase SufC {ECO:0000313|EMBL:ENZ37837.1}; TaxID=997897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] bolteae 90B8.;"
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
L3_114_000G1_scaffold_402_5
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4253..5170
DNA (918bp) protein (306aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IEX7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCY40625.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_114_000G1_scaffold_402_6
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5212..6192)
DNA (981bp) protein (327aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Blautia sp. CAG:37 RepID=R7JQA3_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDE65758.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
AraC family transcriptional regulator
L3_114_000G1_scaffold_402_7
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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6360..7766
DNA (1407bp) protein (469aa)
rhamnulokinase (EC:2.7.1.5)
Rhamnulokinase n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KAZ7_9FIRM
Rhamnulokinase {ECO:0000313|EMBL:EGN40203.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
L3_114_000G1_scaffold_402_8
Roseburia inulinivorans CAG:15, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7794..9053
DNA (1260bp) protein (420aa)
L-rhamnose isomerase {ECO:0000256|HAMAP-Rule:MF_00541}; EC=5.3.1.14 {ECO:0000256|HAMAP-Rule:MF_00541};; TaxID=1263105 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia inulinivorans CAG:15.;"
L-rhamnose isomerase (EC:5.3.1.14)
L-rhamnose isomerase n=1 Tax=Roseburia inulinivorans CAG:15 RepID=R5HQ81_9FIRM
L3_114_000G1_scaffold_402_9
Lachnospiraceae bacterium 3-1, Clostridiales, Clostridia, Firmicutes, Bacteria

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9067..9891
DNA (825bp) protein (275aa)
Rhamnulose-1-phosphate aldolase {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955}; EC=4.1.2.19 {ECO:0000256|HAMAP-Rule:MF_00770, ECO:0000256|SAAS:SAAS00048955};; TaxID=397288 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3-1.;"
Rhamnulose-1-phosphate aldolase n=1 Tax=Lachnospiraceae bacterium 3-1 RepID=R9IUN4_9FIRM
Rhamnulose-1-phosphate aldolase
L3_114_000G1_scaffold_402_10
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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9914..10228
DNA (315bp) protein (105aa)
L-rhamnose mutarotase {ECO:0000256|SAAS:SAAS00048862}; EC=5.1.3.32 {ECO:0000256|SAAS:SAAS00169483};; TaxID=999407 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A7.;"
rhaU; L-rhamnose 1-epimerase (EC:5.1.3.-)
L-rhamnose 1-epimerase n=1 Tax=Clostridium clostridioforme 90A7 RepID=N9XI51_9CLOT
L3_114_000G1_scaffold_402_11
unknown

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10192..10371
DNA (180bp) protein (60aa)

This feature has no annotations

L3_114_000G1_scaffold_402_12
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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10569..11249
DNA (681bp) protein (227aa)
Transcriptional regulatory protein ResD n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQS4_9FIRM
Transcriptional regulatory protein ResD {ECO:0000313|EMBL:EEQ60368.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_114_000G1_scaffold_402_13
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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11246..12769
DNA (1524bp) protein (508aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:7 RepID=R5IP92_9CLOT
integral membrane sensor signal transduction histidine kinase
L3_114_000G1_scaffold_402_14
Bacillus subtilis, Bacillus, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(12862..14631)
DNA (1770bp) protein (590aa)
serine protease (EC:3.1.3.2)
Serine protease {ECO:0000313|EMBL:AEP87524.1}; EC=3.1.3.2 {ECO:0000313|EMBL:AEP87524.1};; TaxID=1052585 species="Bacteria; Firmicutes; Bacilli; Bacillales; Bacillaceae; Bacillus.;" source="Bacillus subtilis subsp. spizizenii (strain TU-B-10).;"
Serine protease n=1 Tax=Bacillus subtilis subsp. spizizenii (strain TU-B-10) RepID=G4NXT4_BACPT
L3_114_000G1_scaffold_402_15
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14776..15717)
DNA (942bp) protein (314aa)
Transcriptional regulator AraC family n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JNG9_9CLOT
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDB62830.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
transcriptional regulator, AraC family
L3_114_000G1_scaffold_402_16
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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15908..18997
DNA (3090bp) protein (1030aa)
Beta-galactosidase {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613}; EC=3.2.1.23 {ECO:0000256|RuleBase:RU361154, ECO:0000256|SAAS:SAAS00046613};; Lactase {ECO:0000256|RuleBase:RU361154}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Beta-galactosidase n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JYF3_9CLOT
glycoside hydrolase family protein
L3_114_000G1_scaffold_402_17
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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19014..20174
DNA (1161bp) protein (387aa)
Major facilitator family transporter n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KL25_9CLOT
Major facilitator family transporter {ECO:0000313|EMBL:CDB62832.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
Fucose permease
L3_114_000G1_scaffold_402_18
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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20178..23396
DNA (3219bp) protein (1073aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JIX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62833.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
glycoside hydrolase family protein
L3_114_000G1_scaffold_402_19
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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23554..24870
DNA (1317bp) protein (439aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JVI6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62834.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
ABC transporter substrate-binding protein
L3_114_000G1_scaffold_402_20
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25106..26209
DNA (1104bp) protein (368aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JNH4_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62835.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
gh105C; unsaturated rhamnogalacturonyl hydrolase Gh105C
L3_114_000G1_scaffold_402_21
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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26232..27119
DNA (888bp) protein (296aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JYF8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62836.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
binding-protein-dependent transport system inner membrane protein
L3_114_000G1_scaffold_402_22
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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27119..27955
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6KL31_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62837.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
binding-protein-dependent transport system inner membrane protein
L3_114_000G1_scaffold_402_23
Clostridium clostridioforme CAG:132, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27971..29614
DNA (1644bp) protein (548aa)
Uncharacterized protein n=1 Tax=Clostridium clostridioforme CAG:132 RepID=R6JIX3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDB62838.1}; TaxID=1263065 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:132.;"
hypothetical protein
L3_114_000G1_scaffold_402_24
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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29727..30701
DNA (975bp) protein (325aa)
Uncharacterized protein n=9 Tax=Clostridium RepID=N9VIP5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF24069.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
ROK family protein
L3_114_000G1_scaffold_402_25
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31050..32072
DNA (1023bp) protein (341aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M889_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64087.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ABC-type Fe3+-hydroxamate transport system, periplasmic binding protein
L3_114_000G1_scaffold_402_26
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32255..33139
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9M082_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64086.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
ABC transporter permease
L3_114_000G1_scaffold_402_27
Anaerotruncus sp. G3(2012), Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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33136..33954
DNA (819bp) protein (273aa)
Uncharacterized protein n=1 Tax=Anaerotruncus sp. G3(2012) RepID=R9LZ48_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOS64085.1}; TaxID=1235835 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus.;" source="Anaerotruncus sp. G3(2012).;"
fecC; ABC transporter
L3_114_000G1_scaffold_402_28
Clostridium sp. CAG:7, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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34155..35744
DNA (1590bp) protein (530aa)
Potassium/proton antiporter n=1 Tax=Clostridium sp. CAG:7 RepID=R5J514_9CLOT
Potassium/proton antiporter {ECO:0000313|EMBL:CCY44121.1}; TaxID=1262832 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:7.;"
sodium/hydrogen exchanger
L3_114_000G1_scaffold_402_29
Clostridium clostridioforme CAG:511, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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35944..37374
DNA (1431bp) protein (477aa)
Efflux transporter, RND family, MFP subunit n=9 Tax=Clostridium RepID=N9Y0L0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDF24265.1}; TaxID=1263066 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium clostridioforme CAG:511.;"
RND family efflux transporter, MFP subunit
L3_114_000G1_scaffold_402_30
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

37386..38168
DNA (783bp) protein (261aa)
Macrolide export ATP-binding/permease protein MacB {ECO:0000256|HAMAP-Rule:MF_01720}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01720};; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ABC transporter, ATP-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EPW1_9FIRM
ABC transporter
Displaying items 1-30 of 69 in total

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