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L3_114_000G1_scaffold_422

Search features with annotation key words

Displaying items 1-30 of 57 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_422_1
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3..533)
DNA (531bp) protein (177aa)
Lacto-N-biose phosphorylase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ8_BIFBI
lacto-N-biose phosphorylase
Lacto-N-biose phosphorylase 2 {ECO:0000313|EMBL:ADO52461.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_2
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(842..1219)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7L0_BIFBI
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EFR49602.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_114_000G1_scaffold_422_3
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1171..2034)
DNA (864bp) protein (288aa)
Short chain dehydrogenase {ECO:0000313|EMBL:KFI42340.1}; EC=1.1.1.100 {ECO:0000313|EMBL:KFI42340.1};; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Short chain dehydrogenase n=4 Tax=Bifidobacterium bifidum RepID=E4NYY6_BIFBP
3-oxoacyl-ACP reductase
L3_114_000G1_scaffold_422_4
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2041..2337)
DNA (297bp) protein (99aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELR3_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52458.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_5
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2725..2865)
DNA (141bp) protein (47aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELR2_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52457.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_6
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

3058..4074
DNA (1017bp) protein (339aa)
HTH-type transcriptional repressor n=4 Tax=Bifidobacterium RepID=I3WFZ3_BIFBI
cytR; HTH-type transcriptional repressor
HTH-type transcriptional repressor {ECO:0000313|EMBL:EKF14756.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_000G1_scaffold_422_7
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4180..4353)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum IPLA 20015 RepID=K2MBU4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKF14757.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
hypothetical protein
L3_114_000G1_scaffold_422_8
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

4511..5200
DNA (690bp) protein (230aa)
Adenylate cyclase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ2_BIFBI
adenylate cyclase
Adenylate cyclase {ECO:0000313|EMBL:AFL03805.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_000G1_scaffold_422_9
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5299..6285)
DNA (987bp) protein (329aa)
Thioredoxin n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFZ1_BIFBI
thioredoxin
Thioredoxin {ECO:0000313|EMBL:AFL03804.1}; TaxID=484020 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum BGN4.;"
L3_114_000G1_scaffold_422_10
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6534..7547)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=6 Tax=Bifidobacterium RepID=I3WFY9_BIFBI
hypothetical protein
Conserved hypothetical secreted protein {ECO:0000313|EMBL:CDB23254.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_000G1_scaffold_422_11
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7540..8613)
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2H860_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50146.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_114_000G1_scaffold_422_12
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8704..9693
DNA (990bp) protein (330aa)
fkbP; putative secreted peptidyl-prolyl cis-transisomerase protein (EC:5.2.1.8)
Peptidyl-prolyl cis-trans isomerase n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6GPR4_9BIFI
Peptidyl-prolyl cis-trans isomerase {ECO:0000256|RuleBase:RU004231}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_000G1_scaffold_422_13
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(9948..10640)
DNA (693bp) protein (231aa)
50S ribosomal protein L1 n=8 Tax=Bifidobacterium RepID=E3ELQ4_BIFBS
rlpA; 50S ribosomal protein L1
50S ribosomal protein L1 {ECO:0000256|HAMAP-Rule:MF_01318}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_14
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(10655..11086)
DNA (432bp) protein (144aa)
50S ribosomal protein L11 n=8 Tax=Bifidobacterium RepID=E3ELQ3_BIFBS
rplK; 50S ribosomal protein L11
50S ribosomal protein L11 {ECO:0000256|HAMAP-Rule:MF_00736, ECO:0000256|SAAS:SAAS00021680}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_000G1_scaffold_422_15
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11411..12352)
DNA (942bp) protein (314aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2HUK4_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50142.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
L3_114_000G1_scaffold_422_16
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12551..13261
DNA (711bp) protein (237aa)
Transcriptional regulator, TetR family n=2 Tax=Bifidobacterium bifidum RepID=E4V7J7_BIFBI
TetR family transcriptional regulator {ECO:0000313|EMBL:EKF15191.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
TetR family transcriptional regulator
L3_114_000G1_scaffold_422_17
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

13484..14827
DNA (1344bp) protein (448aa)
ABC transporter, permease n=3 Tax=Bifidobacterium bifidum RepID=I3WFY2_BIFBI
ABC transporter permease
ABC transporter permease {ECO:0000313|EMBL:EKF15190.1}; TaxID=1207543 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum IPLA 20015.;"
L3_114_000G1_scaffold_422_18
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14923..16248)
DNA (1326bp) protein (442aa)
murA; UDP-N-acetylglucosamine1-carboxyvinyl transferase (EC:2.5.1.7)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|SAAS:SAAS00085344};; TaxID=500634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum ATCC 29521 = JCM 1255 = DSM 20456.;"
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=8 Tax=Bifidobacterium RepID=E3ELP9_BIFBS
L3_114_000G1_scaffold_422_19
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16527..17780)
DNA (1254bp) protein (418aa)
pyr; dihydroorotate dehydrogenase Pyr (EC:1.3.98.1)
Dihydroorotate oxidase {ECO:0000313|EMBL:EFR49585.1}; EC=1.3.98.1 {ECO:0000313|EMBL:EFR49585.1};; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
Pyr Dihydroorotate dehydrogenase n=1 Tax=Bifidobacterium bifidum (strain PRL2010) RepID=E4NYX1_BIFBP
L3_114_000G1_scaffold_422_20
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17805..18911)
DNA (1107bp) protein (369aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP7_BIFBS
CAAX amino terminal protease
Uncharacterized protein {ECO:0000313|EMBL:ADO52442.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_21
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19040..19213)
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=E4V7J1_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EFR49583.1}; TaxID=398513 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum NCIMB 41171.;"
L3_114_000G1_scaffold_422_22
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(19803..20183)
DNA (381bp) protein (127aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP6_BIFBS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADO52441.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
L3_114_000G1_scaffold_422_23
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20258..24277)
DNA (4020bp) protein (1340aa)
Helicase n=1 Tax=Bifidobacterium bifidum (strain S17) RepID=E3ELP5_BIFBS
Helicase {ECO:0000313|EMBL:ADO52440.1}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
helicase
L3_114_000G1_scaffold_422_24
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24436..25128)
DNA (693bp) protein (231aa)
leuD; 3-isopropylmalate dehydratase small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
LeuD 3-isopropylmalate dehydratase small subunit n=6 Tax=Bifidobacterium RepID=E4NYW7_BIFBP
L3_114_000G1_scaffold_422_25
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(25274..26677)
DNA (1404bp) protein (468aa)
leuC; 3-isopropylmalate dehydratase large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=883062 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum (strain S17).;"
3-isopropylmalate dehydratase large subunit n=7 Tax=Bifidobacterium bifidum RepID=E3ELP3_BIFBS
L3_114_000G1_scaffold_422_26
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26985..27806
DNA (822bp) protein (274aa)
HTH-type transcriptional regulator n=2 Tax=Bifidobacterium bifidum RepID=I3WFX4_BIFBI
HTH-type transcriptional regulator {ECO:0000313|EMBL:CDB23819.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
kipR; HTH-type transcriptional regulator
L3_114_000G1_scaffold_422_27
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27952..29241)
DNA (1290bp) protein (430aa)
Putative phosphohydrolase n=1 Tax=Bifidobacterium bifidum BGN4 RepID=I3WFX3_BIFBI
putative phosphohydrolase
Phosphoesterase {ECO:0000313|EMBL:CDB23821.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
L3_114_000G1_scaffold_422_28
Bifidobacterium bifidum CAG:234, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

30313..30939
DNA (627bp) protein (209aa)
ATPase (AAA+ superfamily)-like protein n=1 Tax=Bifidobacterium bifidum CAG:234 RepID=R6HCC2_9BIFI
ATPase (AAA+ superfamily)-like protein {ECO:0000313|EMBL:CDB23822.1}; TaxID=1263058 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium bifidum CAG:234.;"
ATPase AAA
L3_114_000G1_scaffold_422_29
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31008..32546)
DNA (1539bp) protein (513aa)
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17)
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1681 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum.;"
Glutamate--tRNA ligase n=5 Tax=Bifidobacterium bifidum RepID=E3ELN8_BIFBS
L3_114_000G1_scaffold_422_30
Bifidobacterium bifidum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(32795..32890)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Bifidobacterium bifidum LMG 13195 RepID=K2I622_BIFBI
Uncharacterized protein {ECO:0000313|EMBL:EKE50219.1}; TaxID=1207542 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium bifidum LMG 13195.;"
hypothetical protein
Displaying items 1-30 of 57 in total

View Taxonomy