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L3_114_000G1_scaffold_539

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Displaying items 1-30 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_539_1
Yokenella regensburgei, Yokenella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(1..198)
DNA (198bp) protein (66aa)
Glycine betaine/L-proline transport ATP-binding protein proV n=1 Tax=Yokenella regensburgei ATCC 43003 RepID=G9Z000_9ENTR
Glycine betaine/L-proline transport ATP-binding protein proV {ECO:0000313|EMBL:EHM50817.1}; TaxID=1002368 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yokenella.;" source="Yokenella regensburgei ATCC 43003.;"
proV; glycine betaine transporter ATP-binding subunit
L3_114_000G1_scaffold_539_2
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(553..1512)
DNA (960bp) protein (320aa)
Ribonucleoside-diphosphate reductase subunit beta {ECO:0000256|PIRNR:PIRNR000355}; EC=1.17.4.1 {ECO:0000256|PIRNR:PIRNR000355};; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
ribonucleotide-diphosphate reductase subunit beta (EC:1.17.4.1)
Ribonucleoside-diphosphate reductase subunit beta n=1 Tax=Citrobacter sp. KTE32 RepID=R8V880_9ENTR
L3_114_000G1_scaffold_539_3
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1523..3667)
DNA (2145bp) protein (715aa)
Ribonucleoside-diphosphate reductase {ECO:0000256|RuleBase:RU003410}; EC=1.17.4.1 {ECO:0000256|RuleBase:RU003410};; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
Ribonucleoside-diphosphate reductase n=1 Tax=Citrobacter sp. KTE151 RepID=R8WRE7_9ENTR
hypothetical protein
L3_114_000G1_scaffold_539_4
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3640..4050)
DNA (411bp) protein (137aa)
Protein NrdI n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SA31_CITFR
Ribonucleotide reductase stimulatory protein {ECO:0000313|EMBL:AKE59694.1}; TaxID=1261127 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus Y19.;"
nrdI; ribonucleotide reductase stimulatory protein
L3_114_000G1_scaffold_539_5
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4047..4292)
DNA (246bp) protein (82aa)
Glutaredoxin-like protein nrdH n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD02_SHIFL
Glutaredoxin-like protein NrdH, required for reduction of Ribonucleotide reductase class Ib {ECO:0000313|EMBL:CEJ66756.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
glutaredoxin
L3_114_000G1_scaffold_539_6
Citrobacter sp. KTE151, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4534..4965)
DNA (432bp) protein (144aa)
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=1169322 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. KTE151.;"
Uncharacterized protein n=1 Tax=Citrobacter sp. KTE151 RepID=R8WWM0_9ENTR
alkylhydroperoxidase
L3_114_000G1_scaffold_539_7
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5056..6390
DNA (1335bp) protein (445aa)
Bacterial regulatory s, gntR family protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD04_SHIFL
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:EIQ78646.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
DeoR faimly transcriptional regulator
L3_114_000G1_scaffold_539_8
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6514..6864
DNA (351bp) protein (117aa)
Putative cytoplasmic protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD05_SHIFL
Putative cytoplasmic protein {ECO:0000313|EMBL:EIQ78647.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
hypothetical protein
L3_114_000G1_scaffold_539_9
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6900..7349)
DNA (450bp) protein (150aa)
L-alanine exporter AlaE n=7 Tax=Citrobacter RepID=G9SA36_CITFR
membrane protein
L-alanine exporter AlaE {ECO:0000256|HAMAP-Rule:MF_00914}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L3_114_000G1_scaffold_539_10
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7839..8240
DNA (402bp) protein (134aa)
DNA-binding protein n=1 Tax=Citrobacter freundii RepID=UPI0003083B56
DNA-binding protein {ECO:0000256|PIRNR:PIRNR002096}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
DNA-binding protein
L3_114_000G1_scaffold_539_11
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8276..8455)
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BHG9_9ENTR
Uncharacterized protein {ECO:0000313|EMBL:EFE06919.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
hypothetical protein
L3_114_000G1_scaffold_539_12
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8536..9063)
DNA (528bp) protein (176aa)
Inner membrane protein n=3 Tax=Citrobacter RepID=J0LZY8_9ENTR
Inner membrane protein ygaP {ECO:0000313|EMBL:ETX70050.1}; TaxID=1400136 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 31.;"
membrane protein
L3_114_000G1_scaffold_539_13
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9073..9372)
DNA (300bp) protein (100aa)
Transcriptional regulator n=2 Tax=Citrobacter RepID=R8V6N3_9ENTR
Transcriptional regulator {ECO:0000313|EMBL:KKC64865.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
transcriptional regulator
L3_114_000G1_scaffold_539_14
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9557..9715
DNA (159bp) protein (53aa)
Uncharacterized protein n=1 Tax=Raoultella ornithinolytica B6 RepID=M9W964_RAOOR
hypothetical protein
Proteolipid membrane potential modulator family protein {ECO:0000313|EMBL:KDV97062.1}; TaxID=1444039 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 2-156-04_S1_C1.;"
L3_114_000G1_scaffold_539_15
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9712..10404)
DNA (693bp) protein (231aa)
DNA-binding transcriptional regulator CsiR n=1 Tax=Citrobacter freundii ATCC 8090 = MTCC 1658 RepID=K8QWA4_CITFR
transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:AHY10022.1}; TaxID=1333848 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii CFNIH1.;"
L3_114_000G1_scaffold_539_16
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10450..11850)
DNA (1401bp) protein (467aa)
GABA permease n=3 Tax=Citrobacter RepID=C1MAI6_9ENTR
GABA permease {ECO:0000313|EMBL:ETX61924.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
gamma-aminobutyrate transporter
L3_114_000G1_scaffold_539_17
Citrobacter amalonaticus, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11995..13278)
DNA (1284bp) protein (428aa)
4-aminobutyrate aminotransferase n=1 Tax=Citrobacter freundii RepID=UPI0002EA9149
4-aminobutyrate aminotransferase {ECO:0000313|EMBL:KKC64870.1}; TaxID=35703 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter amalonaticus.;"
4-aminobutyrate aminotransferase
L3_114_000G1_scaffold_539_18
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13303..14751)
DNA (1449bp) protein (483aa)
gabD; succinate-semialdehyde dehydrogenase (EC:1.2.1.16)
Succinate-semialdehyde dehydrogenase [NADP+] n=1 Tax=Citrobacter sp. KTE32 RepID=R8V7C9_9ENTR
Succinate-semialdehyde dehydrogenase [NADP+] {ECO:0000313|EMBL:ETX61922.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
L3_114_000G1_scaffold_539_19
Escherichia coli, Escherichia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14775..16043)
DNA (1269bp) protein (423aa)
L-2-hydroxyglutarate oxidase LhgO {ECO:0000256|HAMAP-Rule:MF_00990}; EC=1.1.3.15 {ECO:0000256|HAMAP-Rule:MF_00990};; TaxID=1444046 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Escherichia.;" source="Escherichia coli 5-172-05_S1_C1.;"
L-2-hydroxyglutarate oxidase LhgO n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAI3_9ENTR
hydroxyglutarate oxidase
L3_114_000G1_scaffold_539_20
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16063..17040)
DNA (978bp) protein (326aa)
Protein CsiD n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD21_SHIFL
Protein CsiD {ECO:0000256|HAMAP-Rule:MF_01083}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
carbon starvation induced protein
L3_114_000G1_scaffold_539_21
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17301..17903)
DNA (603bp) protein (201aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BHH9_9ENTR
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EFE06929.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
short-chain dehydrogenase
L3_114_000G1_scaffold_539_22
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

18002..18892
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1MAI0_9ENTR
LysR family transcriptional regulator {ECO:0000313|EMBL:ETX61918.1}; TaxID=1400137 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii UCI 32.;"
LysR family transcriptional regulator
L3_114_000G1_scaffold_539_23
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18989..20503)
DNA (1515bp) protein (505aa)
Uncharacterized protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD24_SHIFL
Uncharacterized protein {ECO:0000313|EMBL:EIQ78666.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
tripartite tricarboxylate transporter TctA
L3_114_000G1_scaffold_539_24
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20514..20948)
DNA (435bp) protein (145aa)
Putative uncharacterized protein n=1 Tax=Citrobacter freundii 4_7_47CFAA RepID=G9SA52_CITFR
Tricarboxylate transport protein TctB {ECO:0000313|EMBL:CEJ66778.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
membrane protein
L3_114_000G1_scaffold_539_25
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20963..21940)
DNA (978bp) protein (326aa)
Tricarboxylic transport n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3DLN9_CITFR
Tricarboxylate transport protein TctC {ECO:0000313|EMBL:CEJ66779.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
tricarboxylic transport membrane protein
L3_114_000G1_scaffold_539_26
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22093..22767
DNA (675bp) protein (225aa)
Response regulator n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD27_SHIFL
Response regulator {ECO:0000313|EMBL:EIQ78669.1}; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
transcriptional regulator
L3_114_000G1_scaffold_539_27
Shigella flexneri, Shigella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

22754..24166
DNA (1413bp) protein (471aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=766154 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Shigella.;" source="Shigella flexneri 1235-66.;"
HAMP domain protein n=1 Tax=Shigella flexneri 1235-66 RepID=I6HD28_SHIFL
histidine kinase
L3_114_000G1_scaffold_539_28
Citrobacter freundii, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24463..25878
DNA (1416bp) protein (472aa)
Undecaprenyl-phosphate glucose phosphotransferase n=1 Tax=Citrobacter freundii GTC 09479 RepID=M3CY82_CITFR
UDP-phosphate glucose phosphotransferase {ECO:0000313|EMBL:KJC12909.1}; TaxID=546 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter freundii.;"
UDP-phosphate glucose phosphotransferase
L3_114_000G1_scaffold_539_29
Citrobacter sp. CIP 55.13, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25868..27154
DNA (1287bp) protein (429aa)
capsular polysaccharide biosynthesis protein n=1 Tax=Citrobacter freundii RepID=UPI00030679D7
Capsular polysaccharide synthesis enzyme CpsB {ECO:0000313|EMBL:CEJ66783.1}; TaxID=1563222 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter.;" source="Citrobacter sp. CIP 55.13.;"
capsular biosynthesis protein
L3_114_000G1_scaffold_539_30
Citrobacter youngae, Citrobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

27156..27713
DNA (558bp) protein (186aa)
Polysaccharide biosynthesis/export protein n=1 Tax=Citrobacter youngae ATCC 29220 RepID=D4BHI9_9ENTR
Polysaccharide biosynthesis/export protein {ECO:0000313|EMBL:EFE06939.1}; TaxID=500640 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Citrobacter; Citrobacter freundii complex.;" source="Citrobacter youngae ATCC 29220.;"
capsular biosynthesis protein
Displaying items 1-30 of 59 in total

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