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L3_114_000G1_scaffold_78

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Displaying items 1-30 of 142 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_78_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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167..580
DNA (414bp) protein (138aa)
CBS domain protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDL6_9FIRM
CBS domain protein {ECO:0000313|EMBL:ERJ96601.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CBS-domain-containing membrane protein
L3_114_000G1_scaffold_78_2
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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854..1930
DNA (1077bp) protein (359aa)
Phosphonate ABC transporter phosphate-binding protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H5U7_9FIRM
Phosphonate ABC transporter phosphate-binding protein {ECO:0000313|EMBL:CDE34676.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphate/phosphite/phosphonate ABC transporter, periplasmic binding protein
L3_114_000G1_scaffold_78_3
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1950..2732
DNA (783bp) protein (261aa)
Phosphonates import ATP-binding protein PhnC {ECO:0000256|HAMAP-Rule:MF_01713}; EC=3.6.3.28 {ECO:0000256|HAMAP-Rule:MF_01713};; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Phosphonate ABC transporter ATP-binding protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H8Z7_9FIRM
phosphonate ABC transporter, ATP-binding protein
L3_114_000G1_scaffold_78_4
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2729..3523
DNA (795bp) protein (265aa)
Transporter n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H6R0_9FIRM
Transporter {ECO:0000313|EMBL:CDE34678.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ABC-type phosphate/phosphonate transport system, permease component
L3_114_000G1_scaffold_78_5
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3523..4383
DNA (861bp) protein (287aa)
ABC-type phosphate/phosphonate transport system, permease component n=1 Tax=Clostridium pasteurianum BC1 RepID=R4K6X8_CLOPA
ABC-type phosphate/phosphonate transport system, permease component
ABC-type phosphate/phosphonate transport system, permease component {ECO:0000313|EMBL:AGK98318.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_114_000G1_scaffold_78_6
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4429..4854
DNA (426bp) protein (142aa)
Phosphonate C-P lyase system protein PhnG n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H588_9FIRM
Phosphonate C-P lyase system protein PhnG {ECO:0000313|EMBL:CDE34158.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate C-P lyase system protein PhnG
L3_114_000G1_scaffold_78_7
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4851..5438
DNA (588bp) protein (196aa)
Phosphonate C-P lyase system protein PhnH n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4C8_9FIRM
Phosphonate C-P lyase system protein PhnH {ECO:0000313|EMBL:CDE34156.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein PhnH
L3_114_000G1_scaffold_78_8
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5426..6499
DNA (1074bp) protein (358aa)
Bacterial phosphonate metabolism protein (PhnI) n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H583_9FIRM
Bacterial phosphonate metabolism protein (PhnI) {ECO:0000313|EMBL:CDE34153.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein
L3_114_000G1_scaffold_78_9
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6486..7331
DNA (846bp) protein (282aa)
Phosphonate metabolism protein PhnJ n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4C2_9FIRM
Phosphonate metabolism protein PhnJ {ECO:0000313|EMBL:CDE34151.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phnJ; phosphonate metabolism protein
L3_114_000G1_scaffold_78_10
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7321..8154
DNA (834bp) protein (278aa)
Phosphonate metabolism protein PhnK n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H578_9FIRM
Phosphonate metabolism protein PhnK {ECO:0000313|EMBL:CDE34148.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
ABC-type phosphonate transport system, ATPase component
L3_114_000G1_scaffold_78_11
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8170..9348
DNA (1179bp) protein (393aa)
Phosphonate metabolism protein PhnM n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H4B8_9FIRM
Phosphonate metabolism protein PhnM {ECO:0000313|EMBL:CDE34146.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phosphonate metabolism protein PhnM
L3_114_000G1_scaffold_78_12
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9345..10037
DNA (693bp) protein (231aa)
Phosphonate C-P lyase system protein PhnL n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H7G3_9FIRM
Phosphonate C-P lyase system protein PhnL {ECO:0000313|EMBL:CDE34142.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
phnL; phosphonates transport ATP-binding protein PhnL
L3_114_000G1_scaffold_78_13
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10034..10849
DNA (816bp) protein (272aa)
Putative PHP domain protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H452_9FIRM
Putative PHP domain protein {ECO:0000313|EMBL:CDE34140.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
PHP domain-containing protein
L3_114_000G1_scaffold_78_14
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10846..11274
DNA (429bp) protein (143aa)
Acetyltransferases n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBE5_9FIRM
Acetyltransferases {ECO:0000313|EMBL:CDE11986.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
N-acetyltransferase GCN5
L3_114_000G1_scaffold_78_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11341..11895)
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4D2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96599.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Transcriptional regulators, similar to M. xanthus CarD
L3_114_000G1_scaffold_78_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12238..13044
DNA (807bp) protein (269aa)
RNA polymerase sigma factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWE9_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RNA polymerase sigma-32 subunit RpoH
L3_114_000G1_scaffold_78_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13167..13526
DNA (360bp) protein (120aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWZ4_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
spoIIAA; Anti-sigma F factor antagonist
L3_114_000G1_scaffold_78_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13523..13969
DNA (447bp) protein (149aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M4C9_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:ERJ96594.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_78_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13954..14619
DNA (666bp) protein (222aa)
Putative RNA polymerase sigma-F factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MBD0_9FIRM
Putative RNA polymerase sigma-F factor {ECO:0000313|EMBL:ERJ96593.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
sigF; RNA polymerase sigma-F factor
L3_114_000G1_scaffold_78_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14732..16582
DNA (1851bp) protein (617aa)
Radical SAM domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKV7_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:ERJ90119.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Fe-S oxidoreductase
L3_114_000G1_scaffold_78_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16579..17238
DNA (660bp) protein (220aa)
Radical SAM-linked protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDD6_9FIRM
Radical SAM-linked protein {ECO:0000313|EMBL:ERJ90120.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_78_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17526..17870
DNA (345bp) protein (115aa)
50S ribosomal protein L19 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD08_9FIRM
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LSU ribosomal protein L19P
L3_114_000G1_scaffold_78_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18039..18674
DNA (636bp) protein (212aa)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
signal peptidase I, bacterial type (EC:3.4.21.89)
Signal peptidase I n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKV9_9FIRM
L3_114_000G1_scaffold_78_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18699..19592
DNA (894bp) protein (298aa)
Ribosome biogenesis GTPase A (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCY5_9FIRM
Ribosome biogenesis GTP-binding protein YlqF {ECO:0000313|EMBL:ERJ90092.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Ras superfamily GTP-binding protein YlqF
L3_114_000G1_scaffold_78_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19585..20235
DNA (651bp) protein (217aa)
Ribonuclease HII {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016879}; Short=RNase HII {ECO:0000256|HAMAP-Rule:MF_00052};; EC=3.1.26.4 {ECO:0000256|HAMAP-Rule:MF_00052, ECO:0000256|SAAS:SAAS00016872};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RNase HII (EC:3.1.26.4)
Ribonuclease HII n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LSL5_9FIRM
L3_114_000G1_scaffold_78_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20216..20599
DNA (384bp) protein (128aa)
UPF0102 protein RUMCAL_02864 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKU0_9FIRM
UPF0102 protein RUMCAL_02864 {ECO:0000256|HAMAP-Rule:MF_00048}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
conserved hypothetical protein TIGR00252
L3_114_000G1_scaffold_78_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20623..22131
DNA (1509bp) protein (503aa)
threonine synthase (EC:4.2.3.1)
Threonine synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KDB7_9FIRM
Threonine synthase {ECO:0000313|EMBL:ERJ90095.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_78_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22200..22832
DNA (633bp) protein (211aa)
Ser/Thr phosphatase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JV12_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:ERJ90096.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted phosphohydrolase
L3_114_000G1_scaffold_78_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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22995..24317
DNA (1323bp) protein (441aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Trigger factor n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KCZ0_9FIRM
trigger factor
L3_114_000G1_scaffold_78_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24433..25023
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
clpP; ATP-dependent Clp endopeptidase, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=2 Tax=Ruminococcus RepID=U2LSL8_9FIRM
Displaying items 1-30 of 142 in total

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