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L3_114_000G1_scaffold_118

Search features with annotation key words

Displaying items 1-30 of 117 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_118_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..1740
DNA (1740bp) protein (580aa)
RHS repeat-associated core domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6P6_9FIRM
RHS repeat-associated core domain protein {ECO:0000313|EMBL:ERJ97419.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RHS repeat-associated core domain-containing protein
L3_114_000G1_scaffold_118_2
Blautia sp. CAG:257, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1743..2180
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:257 RepID=R5XJU5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA04772.1}; TaxID=1262756 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:257.;"
hypothetical protein
L3_114_000G1_scaffold_118_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2265..2633
DNA (369bp) protein (123aa)
Sporulation initiation factor Spo0A n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDN2_9FIRM
Sporulation initiation factor Spo0A {ECO:0000313|EMBL:ERJ97413.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_118_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2706..3068
DNA (363bp) protein (121aa)
DNA-binding helix-turn-helix protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYN5_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERJ97412.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative transcriptional regulator
L3_114_000G1_scaffold_118_5
Lachnospiraceae bacterium A4, Clostridiales, Clostridia, Firmicutes, Bacteria

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3543..4085
DNA (543bp) protein (181aa)
ECF subfamily RNA polymerase sigma-24 factor n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E82
Sigma-70 family RNA polymerase sigma factor {ECO:0000313|EMBL:EOS22351.1}; TaxID=397291 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium A4.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L3_114_000G1_scaffold_118_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4791..4952
DNA (162bp) protein (54aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6N6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97409.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_118_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5034..6581
DNA (1548bp) protein (516aa)
Resolvase protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDM7_9FIRM
Resolvase protein {ECO:0000313|EMBL:ERJ97408.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_118_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6587..7525
DNA (939bp) protein (313aa)
Recombinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYN0_9FIRM
Recombinase {ECO:0000313|EMBL:ERJ97407.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Putative recombinase
L3_114_000G1_scaffold_118_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7542..9080
DNA (1539bp) protein (513aa)
Recombinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFS4_9FIRM
Recombinase {ECO:0000313|EMBL:ERJ97391.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Putative recombinase
L3_114_000G1_scaffold_118_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9139..10230
DNA (1092bp) protein (364aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KZ43_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97390.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
conserved hypothetical protein
L3_114_000G1_scaffold_118_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10243..10716
DNA (474bp) protein (158aa)
AIG2-like family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M6L5_9FIRM
AIG2-like family protein {ECO:0000313|EMBL:ERJ97389.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_118_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10719..10991
DNA (273bp) protein (91aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MDK3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97388.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein predicted by Glimmer/Critica
L3_114_000G1_scaffold_118_13
Veillonella atypica, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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11271..13772
DNA (2502bp) protein (834aa)
Helicase n=2 Tax=Legionella pneumophila RepID=U1YZX0_LEGPN
Type III restriction enzyme, res subunit {ECO:0000313|EMBL:EFL57338.1}; TaxID=866778 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella.;" source="Veillonella atypica ACS-134-V-Col7a.;"
DEAD/DEAH box helicase
L3_114_000G1_scaffold_118_14
unknown

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13878..15848
DNA (1971bp) protein (657aa)

This feature has no annotations

L3_114_000G1_scaffold_118_15
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15897..16760
DNA (864bp) protein (288aa)
Phospholipase, patatin family n=1 Tax=Ruminococcus albus 8 RepID=E9SFA3_RUMAL
Phospholipase, patatin family {ECO:0000313|EMBL:EGC02045.1}; TaxID=246199 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus 8.;"
phospholipase, patatin family
L3_114_000G1_scaffold_118_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16951..17949
DNA (999bp) protein (333aa)
CobW/P47K family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KVV7_9FIRM
CobW/P47K family protein {ECO:0000313|EMBL:ERJ96427.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Putative GTPases (G3E family)
L3_114_000G1_scaffold_118_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18013..18771)
DNA (759bp) protein (253aa)
Glutamine ABC transporter, ATP-binding protein GlnQ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAS6_9FIRM
Glutamine ABC transporter, ATP-binding protein GlnQ {ECO:0000313|EMBL:ERJ96408.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
putative amino acid ABC transporter ATP-binding protein
L3_114_000G1_scaffold_118_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18783..19436)
DNA (654bp) protein (218aa)
Putative arginine ABC transporter, permease protein ArtQ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3S9_9FIRM
Putative arginine ABC transporter, permease protein ArtQ {ECO:0000313|EMBL:ERJ96409.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
polar amino acid transport system substrate-binding protein
L3_114_000G1_scaffold_118_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19458..20261)
DNA (804bp) protein (268aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWE6_9FIRM
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:ERJ96410.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
family 3 extracellular solute-binding protein
L3_114_000G1_scaffold_118_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20801..21586
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAT2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96413.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ABC-type amino acid transport/signal transduction systems, periplasmic component/domain
L3_114_000G1_scaffold_118_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21602..22303
DNA (702bp) protein (234aa)
Putative arginine ABC transporter, permease protein ArtQ n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3T5_9FIRM
Putative arginine ABC transporter, permease protein ArtQ {ECO:0000313|EMBL:ERJ96414.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
amino acid ABC transporter membrane protein, PAAT family (TC 3.A.1.3.-)
L3_114_000G1_scaffold_118_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22290..23015
DNA (726bp) protein (242aa)
Polar amino acid transport system ATP-binding protein (EC:3.6.3.21)
Arginine ABC transporter, ATP-binding protein ArtM n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWF3_9FIRM
Arginine ABC transporter, ATP-binding protein ArtM {ECO:0000313|EMBL:ERJ96415.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_118_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23017..23436
DNA (420bp) protein (140aa)
hypothetical protein (EC:2.3.1.-)
Acetyltransferase, GNAT family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD05_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ERJ96416.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_118_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23978..24667
DNA (690bp) protein (230aa)
Putative L-ribulose-5-phosphate 4-epimerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MAT8_9FIRM
Putative L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:ERJ96418.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
class II aldolase/adducin family protein
L3_114_000G1_scaffold_118_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24680..25123
DNA (444bp) protein (148aa)
Putative L-fucose mutarotase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3U0_9FIRM
Putative L-fucose mutarotase {ECO:0000313|EMBL:ERJ96419.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RbsD or FucU transport protein
L3_114_000G1_scaffold_118_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25120..26571
DNA (1452bp) protein (484aa)
Sugar (pentulose and hexulose) kinases (EC:2.7.1.51 2.7.1.5)
Carbohydrate kinase, FGGY family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWF7_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:ERJ96420.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_118_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26581..28380
DNA (1800bp) protein (600aa)
L-fucose isomerase {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040911}; Short=FucIase {ECO:0000256|HAMAP-Rule:MF_01254};; EC=5.3.1.25 {ECO:0000256|HAMAP-Rule:MF_01254, ECO:0000256|SAAS:SAAS00040955};; 6-deoxy-L-galactose isomerase {ECO:0000256|HAMAP-Rule:MF_01254}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L-fucose isomerase (EC:5.3.1.25)
L-fucose isomerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KD09_9FIRM
L3_114_000G1_scaffold_118_28
unknown

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comp(28387..28599)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_114_000G1_scaffold_118_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28777..29484
DNA (708bp) protein (236aa)
Polysaccharide deacetylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3U6_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:ERJ96424.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
polysaccharide deacetylase
L3_114_000G1_scaffold_118_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29481..30005
DNA (525bp) protein (175aa)
cob(I)yrinic acid a,c-diamide adenosyltransferase (EC:2.5.1.17)
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KWG3_9FIRM
Putative cob(I)yrinic acid a,c-diamide adenosyltransferase {ECO:0000313|EMBL:ERJ96425.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying items 1-30 of 117 in total

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