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L3_114_000G1_scaffold_355

Search features with annotation key words

Displaying items 1-30 of 78 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_355_1
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..437)
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H1C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE32753.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_114_000G1_scaffold_355_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(532..1020)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K4T9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93516.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_355_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1039..2877)
DNA (1839bp) protein (613aa)
cel; retaining beta-glycosidase (EC:3.2.1.4)
Cellulase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KN77_9FIRM
Cellulase {ECO:0000313|EMBL:ERJ93515.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_355_4
unknown

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comp(2896..4086)
DNA (1191bp) protein (397aa)

This feature has no annotations

L3_114_000G1_scaffold_355_5
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4055..4546)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H1C2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE32753.1}; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
L3_114_000G1_scaffold_355_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4859..7480)
DNA (2622bp) protein (874aa)
Putative translation elongation factor G n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2F7_9FIRM
Putative translation elongation factor G {ECO:0000313|EMBL:ERJ93513.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
small GTP-binding protein domain
L3_114_000G1_scaffold_355_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7706..8494)
DNA (789bp) protein (263aa)
Bacterial sugar transferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K4T3_9FIRM
Bacterial sugar transferase {ECO:0000313|EMBL:ERJ93511.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Sugar transferases involved in lipopolysaccharide synthesis
L3_114_000G1_scaffold_355_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8674..10620)
DNA (1947bp) protein (649aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
thrS; Threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KN72_9FIRM
L3_114_000G1_scaffold_355_9
Clostridium pasteurianum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11195..11965)
DNA (771bp) protein (257aa)
Trans-aconitate methyltransferase n=1 Tax=Clostridium pasteurianum BC1 RepID=R4JXK5_CLOPA
trans-aconitate methyltransferase
Trans-aconitate methyltransferase {ECO:0000313|EMBL:AGK95537.1}; TaxID=86416 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium pasteurianum BC1.;"
L3_114_000G1_scaffold_355_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11962..12612)
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2F2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93508.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_355_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12578..13462)
DNA (885bp) protein (295aa)
N-acetylmuramoyl-L-alanine amidase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KMK2_9FIRM
N-acetylmuramoyl-L-alanine amidase {ECO:0000313|EMBL:ERJ93507.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
cell wall hydrolase/autolysin
L3_114_000G1_scaffold_355_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13484..14350)
DNA (867bp) protein (289aa)
PSP1 protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K4S8_9FIRM
PSP1 protein {ECO:0000313|EMBL:ERJ93506.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Uncharacterized homolog of PSP1
L3_114_000G1_scaffold_355_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14393..15361)
DNA (969bp) protein (323aa)
DNA polymerase III, delta' subunit domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KN68_9FIRM
DNA polymerase III, delta' subunit domain protein {ECO:0000313|EMBL:ERJ93505.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_355_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15371..16699)
DNA (1329bp) protein (443aa)
Arginine/lysine/ornithine decarboxylases (EC:4.1.1.19 4.1.1.18)
Orn/Lys/Arg decarboxylase, major domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LVK8_9FIRM
Orn/Lys/Arg decarboxylase, major domain protein {ECO:0000313|EMBL:ERJ93504.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_355_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16733..17020)
DNA (288bp) protein (96aa)
Sigma-70, region 4 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2E5_9FIRM
Sigma-70, region 4 {ECO:0000313|EMBL:ERJ93503.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog
L3_114_000G1_scaffold_355_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17011..17244)
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KMJ8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93502.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_355_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17411..18037)
DNA (627bp) protein (209aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KN61_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93500.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_355_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18167..18337)
DNA (171bp) protein (57aa)
Ferredoxin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LVK3_9FIRM
Ferredoxin {ECO:0000313|EMBL:ERJ93499.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
dissimilatory sulfite reductase (desulfoviridin), alpha/beta subunit
L3_114_000G1_scaffold_355_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18442..18771)
DNA (330bp) protein (110aa)
Transcriptional repressor SmtB family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KMJ3_9FIRM
Transcriptional repressor SmtB family protein {ECO:0000313|EMBL:ERJ93497.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
transcriptional regulator, ArsR family
L3_114_000G1_scaffold_355_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18927..20513)
DNA (1587bp) protein (529aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Ribonuclease Y n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2Q7_9FIRM
metal dependent phosphohydrolase
L3_114_000G1_scaffold_355_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21124..22485)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K542_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93601.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted GTPase
L3_114_000G1_scaffold_355_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22707..23549)
DNA (843bp) protein (281aa)
nicotinate-nucleotide pyrophosphorylase [carboxylating] (EC:2.4.2.19)
Nicotinate-nucleotide diphosphorylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LVV3_9FIRM
Nicotinate-nucleotide diphosphorylase {ECO:0000313|EMBL:ERJ93599.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_355_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23597..25048)
DNA (1452bp) protein (484aa)
L-aspartate oxidase {ECO:0000256|RuleBase:RU362049}; EC=1.4.3.16 {ECO:0000256|RuleBase:RU362049};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L-aspartate oxidase (EC:1.4.3.16)
Putative L-aspartate oxidase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M2Q3_9FIRM
L3_114_000G1_scaffold_355_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25514..26050
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K537_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93596.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_355_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26094..26546
DNA (453bp) protein (151aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KNG8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ93595.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_355_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26735..27082
DNA (348bp) protein (116aa)
mRNA interferase {ECO:0000256|PIRNR:PIRNR033490}; EC=3.1.-.- {ECO:0000256|PIRNR:PIRNR033490};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
mRNA interferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LWI7_9FIRM
Growth inhibitor
L3_114_000G1_scaffold_355_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(27401..27661)
DNA (261bp) protein (87aa)
30S ribosomal protein S20 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M3E2_9FIRM
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
30S ribosomal protein S20
L3_114_000G1_scaffold_355_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27950..28807
DNA (858bp) protein (286aa)
Germination protease {ECO:0000256|HAMAP-Rule:MF_00626}; EC=3.4.24.78 {ECO:0000256|HAMAP-Rule:MF_00626};; GPR endopeptidase {ECO:0000256|HAMAP-Rule:MF_00626}; Germination proteinase {ECO:0000256|HAMAP-Rule:MF_00626}; Spore protease {ECO:0000256|HAMAP-Rule:MF_00626}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Germination protease. (EC:3.4.24.78)
Germination protease n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5S1_9FIRM
L3_114_000G1_scaffold_355_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


29190..29480
DNA (291bp) protein (97aa)
Ribosomal protein S6 (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K6D9_9FIRM
Ribosomal protein S6 {ECO:0000313|EMBL:ERJ87665.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S6P
L3_114_000G1_scaffold_355_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29506..30048
DNA (543bp) protein (181aa)
Single-stranded DNA-binding protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JN37_9FIRM
Single-stranded DNA-binding protein {ECO:0000256|HAMAP-Rule:MF_00984, ECO:0000256|PIRNR:PIRNR002070}; Short=SSB {ECO:0000256|HAMAP-Rule:MF_00984};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
single stranded DNA-binding protein (ssb)
Displaying items 1-30 of 78 in total

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