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L3_114_000G1_scaffold_705

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Displaying items 1-30 of 62 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_705_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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360..1058
DNA (699bp) protein (233aa)
Putative sensory transduction protein RegX3 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LDH5_9FIRM
Putative sensory transduction protein RegX3 {ECO:0000313|EMBL:ERJ87524.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
winged helix family two component transcriptional regulator
L3_114_000G1_scaffold_705_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1048..2493
DNA (1446bp) protein (482aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5Y9_9FIRM
Signal transduction histidine kinase
L3_114_000G1_scaffold_705_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2731..3708
DNA (978bp) protein (326aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JMQ7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87526.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted metal-dependent enzyme
L3_114_000G1_scaffold_705_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3702..4553
DNA (852bp) protein (284aa)
hemK; M|ethyltransferase, HemK family (EC:2.1.1.-)
Protein-(Glutamine-N5) methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5K0_9FIRM
Protein-(Glutamine-N5) methyltransferase {ECO:0000313|EMBL:ERJ87527.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_705_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4669..5898
DNA (1230bp) protein (410aa)
Protein RecA n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LKB3_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RecA protein
L3_114_000G1_scaffold_705_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5910..6545
DNA (636bp) protein (212aa)
Regulatory protein RecX n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LDI3_9FIRM
Regulatory protein RecX {ECO:0000256|HAMAP-Rule:MF_01114, ECO:0000256|SAAS:SAAS00093789}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
regulatory protein RecX
L3_114_000G1_scaffold_705_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6630..7640
DNA (1011bp) protein (337aa)
Polysaccharide deacetylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K623_9FIRM
Polysaccharide deacetylase {ECO:0000313|EMBL:ERJ87530.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
polysaccharide deacetylase
L3_114_000G1_scaffold_705_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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7955..9298
DNA (1344bp) protein (448aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
SSU ribosomal protein S12P methylthiotransferase (EC:1.3.1.74 2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JMS6_9FIRM
L3_114_000G1_scaffold_705_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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9282..9857
DNA (576bp) protein (192aa)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase (EC:2.7.8.5)
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K5L0_9FIRM
CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase {ECO:0000313|EMBL:ERJ87532.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_705_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10073..10210
DNA (138bp) protein (46aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KS08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ95037.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_705_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10502..11524
DNA (1023bp) protein (341aa)
Aldose 1-epimerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LDK1_9FIRM
Aldose 1-epimerase {ECO:0000313|EMBL:ERJ87534.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Galactose mutarotase and related enzymes
L3_114_000G1_scaffold_705_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11965..14307
DNA (2343bp) protein (781aa)
Tetratricopeptide repeat protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K628_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:ERJ87535.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_705_13
Ruminococcus sp. CAG:403, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14333..15727
DNA (1395bp) protein (465aa)
Glucanase {ECO:0000256|RuleBase:RU361167}; EC=3.2.1.- {ECO:0000256|RuleBase:RU361167};; TaxID=1262958 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:403.;"
Endoglucanase Y (EC:3.2.1.4)
Endoglucanase Y n=1 Tax=Ruminococcus sp. CAG:403 RepID=R7H3F2_9FIRM
L3_114_000G1_scaffold_705_14
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15807..16082)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFP7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34887.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
Predicted transcriptional regulator with C-terminal CBS domains
L3_114_000G1_scaffold_705_15
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16086..16448)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Lachnospiraceae bacterium 3_1_57FAA_CT1 RepID=F7KFP6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN34886.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_114_000G1_scaffold_705_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16541..17218)
DNA (678bp) protein (226aa)
TIGR00266 family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LLA2_9FIRM
TIGR00266 family protein {ECO:0000313|EMBL:ERJ87898.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
conserved hypothetical protein TIGR00266
L3_114_000G1_scaffold_705_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17292..18287)
DNA (996bp) protein (332aa)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LEK8_9FIRM
Bifunctional ligase/repressor BirA {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin--protein ligase {ECO:0000256|HAMAP-Rule:MF_00978}; Biotin-[acetyl-CoA carboxylase] synthetase {ECO:0000256|HAMAP-Rule:MF_00978}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
biotin
L3_114_000G1_scaffold_705_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18901..19665)
DNA (765bp) protein (255aa)
hydrolase, TatD family (EC:3.1.21.-)
Hydrolase, TatD family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KG79_9FIRM
Hydrolase, TatD family {ECO:0000313|EMBL:ERJ91262.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_705_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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20176..21324
DNA (1149bp) protein (383aa)
Alanine racemase {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247}; EC=5.1.1.1 {ECO:0000256|HAMAP-Rule:MF_01201, ECO:0000256|RuleBase:RU004247};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
alr; Alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LVT4_9FIRM
L3_114_000G1_scaffold_705_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21922..24888
DNA (2967bp) protein (989aa)
Putative CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LP01_9FIRM
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:ERJ91229.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
CoA-substrate-specific enzyme activase, putative
L3_114_000G1_scaffold_705_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25188..26426
DNA (1239bp) protein (413aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KGK4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ91230.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_705_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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26426..26905
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JY63_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ91231.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_705_23
Clostridium sp. CAG:127, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26961..27443)
DNA (483bp) protein (161aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:127 RepID=R5NPX0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CCZ05868.1}; TaxID=1262774 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:127.;"
Protein of unknown function (DUF2798).
L3_114_000G1_scaffold_705_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28004..29464
DNA (1461bp) protein (487aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
prolyl-tRNA synthetase (EC:6.1.1.15)
Proline--tRNA ligase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K718_9FIRM
L3_114_000G1_scaffold_705_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30284..31060
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JNR2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87901.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_705_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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31071..31778
DNA (708bp) protein (236aa)
Sortase family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K6J8_9FIRM
Sortase family protein {ECO:0000313|EMBL:ERJ87902.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LPXTG-site transpeptidase (sortase) family protein
L3_114_000G1_scaffold_705_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31775..32623
DNA (849bp) protein (283aa)
Uncharacterized protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LLA7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87903.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_705_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33133..33447
DNA (315bp) protein (105aa)
30S ribosomal protein S10 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KYA6_9FIRM
30S ribosomal protein S10 {ECO:0000256|HAMAP-Rule:MF_00508}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
rpsJ; ribosomal protein S10
L3_114_000G1_scaffold_705_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


33557..34189
DNA (633bp) protein (211aa)
50S ribosomal protein L3 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M5R2_9FIRM
50S ribosomal protein L3 {ECO:0000256|HAMAP-Rule:MF_01325, ECO:0000256|RuleBase:RU003906}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LSU ribosomal protein L3P
L3_114_000G1_scaffold_705_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


34207..34833
DNA (627bp) protein (209aa)
50S ribosomal protein L4 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MCQ4_9FIRM
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
LSU ribosomal protein L4P
Displaying items 1-30 of 62 in total

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