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L3_114_000G1_scaffold_886

Search features with annotation key words

Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_886_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..499
DNA (498bp) protein (166aa)
Class II glutamine amidotransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KSC5_9FIRM
Class II glutamine amidotransferase {ECO:0000313|EMBL:ERJ94980.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_886_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

714..947
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KS70_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ95112.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_886_3
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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971..2017
DNA (1047bp) protein (349aa)
Site-specific recombinase, phage integrase family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KSS4_9FIRM
Site-specific recombinase, phage integrase family {ECO:0000313|EMBL:ERJ95110.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Phage integrase family.
L3_114_000G1_scaffold_886_4
Ruminococcus champanellensis, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2188..2805
DNA (618bp) protein (206aa)
Putative uncharacterized protein n=1 Tax=Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13) RepID=D4LEK0_RUMC1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL18045.1}; TaxID=213810 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus champanellensis (strain DSM 18848 / JCM 17042 / 18P13).;"
L3_114_000G1_scaffold_886_5
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2792..3019
DNA (228bp) protein (76aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UHL3_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU21258.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_114_000G1_scaffold_886_6
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3249..3521)
DNA (273bp) protein (91aa)
Helix-turn-helix domain protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UL84_RUMA7
helix-turn-helix domain protein
Helix-turn-helix domain protein {ECO:0000313|EMBL:ADU24430.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_114_000G1_scaffold_886_7
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3518..3880)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UL83_RUMA7
protein of unknown function DUF891
Uncharacterized protein {ECO:0000313|EMBL:ADU24429.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_114_000G1_scaffold_886_8
unknown

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comp(3980..4192)
DNA (213bp) protein (71aa)

This feature has no annotations

L3_114_000G1_scaffold_886_9
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4292..4828)
DNA (537bp) protein (179aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KS76_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ95122.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_886_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4828..7044)
DNA (2217bp) protein (739aa)
HNH endonuclease domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K9F3_9FIRM
HNH endonuclease domain protein {ECO:0000313|EMBL:ERJ95121.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
helicase
L3_114_000G1_scaffold_886_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7534..7932)
DNA (399bp) protein (133aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KFV0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ97416.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_886_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8027..9718)
DNA (1692bp) protein (564aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JMG0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ87451.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_886_13
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9754..10149)
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FDU4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE13474.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
Protein of unknown function (DUF1703)./Predicted AAA-ATPase.
L3_114_000G1_scaffold_886_14
Megasphaera elsdenii CAG:570, Megasphaera, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(10348..11133)
DNA (786bp) protein (262aa)
hypothetical protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E42
Uncharacterized protein {ECO:0000313|EMBL:CDF04798.1}; TaxID=1263087 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Megasphaera; environmental samples.;" source="Megasphaera elsdenii CAG:570.;"
L3_114_000G1_scaffold_886_15
Clostridium autoethanogenum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11130..12242)
DNA (1113bp) protein (371aa)
SMC domain-containing protein n=1 Tax=Ruminococcus flavefaciens RepID=UPI0001C37E43
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGY77724.1}; TaxID=1341692 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium autoethanogenum DSM 10061.;"
L3_114_000G1_scaffold_886_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12895..14079)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K9F0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ95116.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_886_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14515..15528)
DNA (1014bp) protein (338aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LM18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ88153.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
conserved hypothetical protein
L3_114_000G1_scaffold_886_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15525..16709)
DNA (1185bp) protein (395aa)
Transporter, major facilitator family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KS99_9FIRM
Transporter, major facilitator family protein {ECO:0000313|EMBL:ERJ95152.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
possible sugar permease
L3_114_000G1_scaffold_886_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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16823..17734
DNA (912bp) protein (304aa)
Transcriptional regulator, AraC family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K9I1_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:ERJ95151.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000G1_scaffold_886_20
unknown

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comp(18077..18352)
DNA (276bp) protein (92aa)

This feature has no annotations

L3_114_000G1_scaffold_886_21
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18395..20281)
DNA (1887bp) protein (629aa)
Glycosidases (EC:3.2.1.41)
Glycosidases n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FDH5_9FIRM
Glycosidases {ECO:0000313|EMBL:CDE12568.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L3_114_000G1_scaffold_886_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20627..23035)
DNA (2409bp) protein (803aa)
Alpha-1,4 glucan phosphorylase {ECO:0000256|RuleBase:RU000587}; EC=2.4.1.1 {ECO:0000256|RuleBase:RU000587};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
glycogen/starch/alpha-glucan phosphorylases (EC:2.4.1.1)
Phosphorylase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KS96_9FIRM
L3_114_000G1_scaffold_886_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23668..33183
DNA (9516bp) protein (3172aa)
Repeat protein (Fragment) n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M078_9FIRM
Repeat protein {ECO:0000313|EMBL:ERJ95144.1}; Flags: Fragment;; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_886_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33370..34806
DNA (1437bp) protein (479aa)
Adenylosuccinate lyase {ECO:0000256|RuleBase:RU361172}; Short=ASL {ECO:0000256|RuleBase:RU361172};; EC=4.3.2.2 {ECO:0000256|RuleBase:RU361172};; Adenylosuccinase {ECO:0000256|RuleBase:RU361172}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
adenylosuccinate lyase (EC:4.3.2.2)
Adenylosuccinate lyase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JKA9_9FIRM
L3_114_000G1_scaffold_886_25
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34962..35516
DNA (555bp) protein (185aa)
Sortase and related acyltransferases (EC:2.3.1.-)
Putative phosphinothricin N-acetyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K356_9FIRM
Sortase and related acyltransferases {ECO:0000313|EMBL:CDE11877.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L3_114_000G1_scaffold_886_26
unknown

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comp(35568..36362)
DNA (795bp) protein (265aa)

This feature has no annotations

L3_114_000G1_scaffold_886_27
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36744..38924
DNA (2181bp) protein (727aa)
BNR/Asp-box repeat protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2LB47_9FIRM
BNR/Asp-box repeat protein {ECO:0000313|EMBL:ERJ86699.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
BNR/Asp-box repeat.
L3_114_000G1_scaffold_886_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

38963..39697
DNA (735bp) protein (245aa)
Glycosyl hydrolase family 25 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K3L2_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:ERJ86700.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
glycosyl hydrolase
L3_114_000G1_scaffold_886_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

39710..40687
DNA (978bp) protein (326aa)
mannose-6-phosphate isomerase, type 1 (EC:5.3.1.8)
Mannose-6-phosphate isomerase, class I n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2JKB4_9FIRM
Mannose-6-phosphate isomerase, class I {ECO:0000313|EMBL:ERJ86701.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_886_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

40729..41673
DNA (945bp) protein (315aa)
ROK family protein (putative glucokinase) (EC:2.7.1.2)
Putative glucokinase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2K359_9FIRM
Putative glucokinase {ECO:0000313|EMBL:ERJ86702.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying items 1-30 of 33 in total

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