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L3_114_000G1_scaffold_1454

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_1454_1
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(146..658)
DNA (513bp) protein (171aa)
Anaerobic ribonucleoside-triphosphate reductase-activating protein {ECO:0000256|PIRNR:PIRNR000368}; EC=1.97.1.- {ECO:0000256|PIRNR:PIRNR000368};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Anaerobic ribonucleoside-triphosphate reductase-activating protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX80_9FIRM
anaerobic ribonucleoside-triphosphate reductase activating protein
L3_114_000G1_scaffold_1454_2
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(676..2835)
DNA (2160bp) protein (720aa)
nrdD; anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEE6_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:ERJ96901.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_3
unknown

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comp(2938..3249)
DNA (312bp) protein (104aa)

This feature has no annotations

L3_114_000G1_scaffold_1454_4
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3618..4430
DNA (813bp) protein (271aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX75_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ96897.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_5
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4619..5407)
DNA (789bp) protein (263aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
dapB; Dihydrodipicolinate reductase (EC:1.17.1.8)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEE0_9FIRM
L3_114_000G1_scaffold_1454_6
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5407..6297)
DNA (891bp) protein (297aa)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXQ1_9FIRM
L3_114_000G1_scaffold_1454_7
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6347..7426)
DNA (1080bp) protein (360aa)
aspartate semialdehyde dehydrogenase (EC:1.2.1.11)
Aspartate-semialdehyde dehydrogenase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M578_9FIRM
Aspartate-semialdehyde dehydrogenase {ECO:0000313|EMBL:ERJ96894.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_8
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7761..8804
DNA (1044bp) protein (348aa)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094456}; EC=2.4.99.17 {ECO:0000256|HAMAP-Rule:MF_00113, ECO:0000256|SAAS:SAAS00094434};; Queuosine biosynthesis protein QueA {ECO:0000256|HAMAP-Rule:MF_00113}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
S-adenosylmethionine--tRNA ribosyltransferase-isomerase (EC:5.-.-.-)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX70_9FIRM
L3_114_000G1_scaffold_1454_9
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8801..9394
DNA (594bp) protein (198aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FBR4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE12729.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
L3_114_000G1_scaffold_1454_10
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9419..10552
DNA (1134bp) protein (378aa)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KED5_9FIRM
L3_114_000G1_scaffold_1454_11
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10624..11148)
DNA (525bp) protein (175aa)
Ribosomal subunit interface protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXP7_9FIRM
Ribosomal subunit interface protein {ECO:0000313|EMBL:ERJ96890.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ribosomal subunit interface protein
L3_114_000G1_scaffold_1454_12
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11433..11897
DNA (465bp) protein (155aa)
FHA domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MC57_9FIRM
FHA domain protein {ECO:0000313|EMBL:ERJ96888.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
FOG: FHA domain
L3_114_000G1_scaffold_1454_13
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11890..13185
DNA (1296bp) protein (432aa)
Cell cycle protein, FtsW/RodA/SpoVE family n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX66_9FIRM
Cell cycle protein, FtsW/RodA/SpoVE family {ECO:0000313|EMBL:ERJ96887.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Bacterial cell division membrane protein
L3_114_000G1_scaffold_1454_14
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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13182..14537
DNA (1356bp) protein (452aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KED0_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:ERJ96886.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_114_000G1_scaffold_1454_15
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14623..15303)
DNA (681bp) protein (227aa)
RelA/SpoT domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXP0_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:ERJ96885.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
RelA/SpoT domain-containing protein
L3_114_000G1_scaffold_1454_16
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15393..18263)
DNA (2871bp) protein (957aa)
gatB; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit (EC:6.3.5.6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M567_9FIRM
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit {ECO:0000313|EMBL:ERJ96884.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_17
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18282..19736)
DNA (1455bp) protein (485aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
gatA; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, A subunit (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase subunit A n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MC52_9FIRM
L3_114_000G1_scaffold_1454_18
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19787..20065)
DNA (279bp) protein (93aa)
gatC; Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C subunit (EC:6.3.5.6)
Glutamyl-tRNA(Gln) amidotransferase, C subunit n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX61_9FIRM
Glutamyl-tRNA(Gln) amidotransferase, C subunit {ECO:0000313|EMBL:ERJ96882.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_19
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20339..21190
DNA (852bp) protein (284aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEC5_9FIRM
L3_114_000G1_scaffold_1454_20
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21238..22443
DNA (1206bp) protein (402aa)
LL-diaminopimelate aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642}; Short=DAP-AT {ECO:0000256|HAMAP-Rule:MF_01642};; Short=DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; Short=LL-DAP-aminotransferase {ECO:0000256|HAMAP-Rule:MF_01642};; EC=2.6.1.83 {ECO:0000256|HAMAP-Rule:MF_01642};; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
dapL; LL-diaminopimelate aminotransferase (EC:2.6.1.83)
LL-diaminopimelate aminotransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXN3_9FIRM
L3_114_000G1_scaffold_1454_21
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22489..22758
DNA (270bp) protein (90aa)
UPF0237 protein RUMCAL_00806 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M562_9FIRM
UPF0237 protein RUMCAL_00806 {ECO:0000256|HAMAP-Rule:MF_01054}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
ACT domain-containing protein
L3_114_000G1_scaffold_1454_22
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22796..24166
DNA (1371bp) protein (457aa)
UPF0210 protein RUMCAL_00805 n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MC47_9FIRM
UPF0210 protein RUMCAL_00805 {ECO:0000256|HAMAP-Rule:MF_01221}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_1454_23
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24174..25430
DNA (1257bp) protein (419aa)
Flavoprotein family protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KX57_9FIRM
Flavoprotein family protein {ECO:0000313|EMBL:ERJ96877.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Predicted flavoproteins
L3_114_000G1_scaffold_1454_24
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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25427..27028
DNA (1602bp) protein (534aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KEC1_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ERJ96876.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Uncharacterized FAD-dependent dehydrogenases
L3_114_000G1_scaffold_1454_25
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27113..28168
DNA (1056bp) protein (352aa)
Phage integrase, SAM-like domain protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXM8_9FIRM
Phage integrase, SAM-like domain protein {ECO:0000313|EMBL:ERJ96875.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Site-specific recombinase XerD
L3_114_000G1_scaffold_1454_26
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28236..28748)
DNA (513bp) protein (171aa)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2M556_9FIRM
tRNA/rRNA methyltransferase SpoU
L3_114_000G1_scaffold_1454_27
Ruminococcus sp. CAG:330, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28864..29037
DNA (174bp) protein (58aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:330 RepID=R7FGF6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE12747.1}; TaxID=1262954 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:330.;"
hypothetical protein
L3_114_000G1_scaffold_1454_28
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29127..29684)
DNA (558bp) protein (186aa)
Putative flavoredoxin n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2MC42_9FIRM
Putative flavoredoxin {ECO:0000313|EMBL:ERJ96873.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
hypothetical protein
L3_114_000G1_scaffold_1454_29
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29851..30918)
DNA (1068bp) protein (356aa)
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KXF5_9FIRM
Tryptophan--tRNA ligase {ECO:0000313|EMBL:ERJ96795.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
L3_114_000G1_scaffold_1454_30
Ruminococcus callidus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31167..31673)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ruminococcus callidus ATCC 27760 RepID=U2KR72_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ERJ94787.1}; TaxID=411473 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus callidus ATCC 27760.;"
Displaying 30 items

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