ggKbase home page

L3_114_000G1_scaffold_71

Search features with annotation key words

Displaying items 1-30 of 134 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000G1_scaffold_71_1
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..305
DNA (303bp) protein (101aa)
LytTr DNA-binding domain protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0G4_9CLOT
LytTr DNA-binding domain protein {ECO:0000313|EMBL:CDE68557.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Response regulator of the LytR/AlgR family
L3_114_000G1_scaffold_71_2
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(300..1604)
DNA (1305bp) protein (435aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY21_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68556.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_114_000G1_scaffold_71_3
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1601..2338)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX14_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68555.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Response regulator of the LytR/AlgR family
L3_114_000G1_scaffold_71_4
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2408..3907)
DNA (1500bp) protein (500aa)
Galactose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; Short=Gal-1-P uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571};; EC=2.7.7.12 {ECO:0000256|HAMAP-Rule:MF_00571};; UDP-glucose--hexose-1-phosphate uridylyltransferase {ECO:0000256|HAMAP-Rule:MF_00571}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
UTP-hexose-1-phosphate uridylyltransferase (EC:2.7.7.10)
Galactose-1-phosphate uridylyltransferase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX65_9CLOT
L3_114_000G1_scaffold_71_5
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4569..5750
DNA (1182bp) protein (394aa)
Major facilitator superfamily MFS_1 n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY69_9CLOT
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:CDE68553.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
major facilitator superfamily protein
L3_114_000G1_scaffold_71_6
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5886..7553)
DNA (1668bp) protein (556aa)
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_00572, ECO:0000256|SAAS:SAAS00085054};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_00572}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_00572}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Isopropylmalate/homocitrate/citramalate synthases (EC:2.3.3.13)
2-isopropylmalate synthase n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0G0_9CLOT
L3_114_000G1_scaffold_71_7
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8029..8943
DNA (915bp) protein (305aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY15_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68551.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_114_000G1_scaffold_71_8
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9077..11254)
DNA (2178bp) protein (726aa)
Ribonucleoside-triphosphate reductase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX08_9CLOT
Ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDE68550.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
anaerobic ribonucleoside triphosphate reductase
L3_114_000G1_scaffold_71_9
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11505..12038)
DNA (534bp) protein (178aa)
Holliday junction resolvase RecU {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056687}; EC=3.1.22.- {ECO:0000256|HAMAP-Rule:MF_00130, ECO:0000256|SAAS:SAAS00056689};; Recombination protein U homolog {ECO:0000256|HAMAP-Rule:MF_00130}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Holliday junction resolvase RecU n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX60_9CLOT
recombination protein U
L3_114_000G1_scaffold_71_10
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12100..13089)
DNA (990bp) protein (330aa)
pseudouridine synthase, RluA family (EC:5.4.99.12)
Pseudouridine synthase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY64_9CLOT
Pseudouridine synthase {ECO:0000313|EMBL:CDE68548.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_114_000G1_scaffold_71_11
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13112..13693)
DNA (582bp) protein (194aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0F3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68547.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_114_000G1_scaffold_71_12
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13731..15239)
DNA (1509bp) protein (503aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY09_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68546.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
RNA methyltransferase
L3_114_000G1_scaffold_71_13
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15325..16128)
DNA (804bp) protein (268aa)
RelA/SpoT domain protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VMC2_9FIRM
RelA/SpoT domain protein {ECO:0000313|EMBL:CDC93336.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
RelA/SpoT domain-containing protein
L3_114_000G1_scaffold_71_14
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16147..16821)
DNA (675bp) protein (225aa)
Peptidase M23 family n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX03_9CLOT
Peptidase M23 family {ECO:0000313|EMBL:CDE68545.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
peptidase M23
L3_114_000G1_scaffold_71_15
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17005..17796)
DNA (792bp) protein (264aa)
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JX55_9CLOT
L3_114_000G1_scaffold_71_16
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17831..19204)
DNA (1374bp) protein (458aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY60_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE68543.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
metal-binding protein
L3_114_000G1_scaffold_71_17
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19339..20904)
DNA (1566bp) protein (522aa)
Ribonuclease Y {ECO:0000256|HAMAP-Rule:MF_00335}; Short=RNase Y {ECO:0000256|HAMAP-Rule:MF_00335};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00335};; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
Ribonuclease Y n=1 Tax=Clostridium sp. CAG:277 RepID=R7K0E9_9CLOT
RNA binding metal dependent phosphohydrolase
L3_114_000G1_scaffold_71_18
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20999..22186)
DNA (1188bp) protein (396aa)
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
methionine adenosyltransferase (EC:2.5.1.6)
S-adenosylmethionine synthase n=1 Tax=Clostridium sp. CAG:277 RepID=R7JY04_9CLOT
L3_114_000G1_scaffold_71_19
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22660..27801)
DNA (5142bp) protein (1714aa)
Bacterial group 2 Ig-like protein n=1 Tax=Roseburia sp. CAG:380 RepID=R6VQN9_9FIRM
Bacterial group 2 Ig-like protein {ECO:0000313|EMBL:CDC96564.1}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
Ig domain-containing protein
L3_114_000G1_scaffold_71_20
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28097..29284)
DNA (1188bp) protein (396aa)
Elongation factor Tu n=1 Tax=Roseburia sp. CAG:380 RepID=R6VHZ5_9FIRM
Elongation factor Tu {ECO:0000256|HAMAP-Rule:MF_00118, ECO:0000256|RuleBase:RU004061}; Short=EF-Tu {ECO:0000256|HAMAP-Rule:MF_00118};; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
TufB; GTPase
L3_114_000G1_scaffold_71_21
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29432..31549)
DNA (2118bp) protein (706aa)
Elongation factor G n=1 Tax=Clostridium sp. CAG:277 RepID=R7K5Z1_9CLOT
Elongation factor G {ECO:0000256|HAMAP-Rule:MF_00054}; Short=EF-G {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
elongation factor G
L3_114_000G1_scaffold_71_22
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(31574..32044)
DNA (471bp) protein (157aa)
30S ribosomal protein S7 n=2 Tax=Clostridiales RepID=R6VX34_9FIRM
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
30S ribosomal protein S7
L3_114_000G1_scaffold_71_23
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(32200..32613)
DNA (414bp) protein (138aa)
30S ribosomal protein S12 n=2 Tax=Clostridiales RepID=R6VHZ0_9FIRM
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU003623}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
SSU ribosomal protein S12P
L3_114_000G1_scaffold_71_24
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32745..33908)
DNA (1164bp) protein (388aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2C6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE70440.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
hypothetical protein
L3_114_000G1_scaffold_71_25
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33994..35214)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K3H7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE70441.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
peptidoglycan-binding LysM
L3_114_000G1_scaffold_71_26
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35535..35936)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:277 RepID=R7K5Z6_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDE70442.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_114_000G1_scaffold_71_27
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35952..36548)
DNA (597bp) protein (199aa)
Recombination protein RecR n=1 Tax=Clostridium sp. CAG:277 RepID=R7K3M0_9CLOT
Recombination protein RecR {ECO:0000256|HAMAP-Rule:MF_00017, ECO:0000256|SAAS:SAAS00012243}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
recombination protein RecR
L3_114_000G1_scaffold_71_28
Roseburia sp. CAG:380, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36585..36935)
DNA (351bp) protein (117aa)
Nucleoid-associated protein BN635_00449 n=1 Tax=Roseburia sp. CAG:380 RepID=R6VX24_9FIRM
Nucleoid-associated protein BN635_00449 {ECO:0000256|HAMAP-Rule:MF_00274}; TaxID=1262946 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:380.;"
hypothetical protein
L3_114_000G1_scaffold_71_29
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36953..38524)
DNA (1572bp) protein (524aa)
DNA polymerase III, subunits gamma and tau (EC:2.7.7.7)
DNA polymerase III subunits gamma and tau n=1 Tax=Clostridium sp. CAG:277 RepID=R7K2D0_9CLOT
DNA polymerase III subunits gamma and tau {ECO:0000313|EMBL:CDE70445.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
L3_114_000G1_scaffold_71_30
Clostridium sp. CAG:277, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(38538..39611)
DNA (1074bp) protein (358aa)
6-phosphofructokinase n=1 Tax=Clostridium sp. CAG:277 RepID=R7K3I2_9CLOT
6-phosphofructokinase 1 {ECO:0000313|EMBL:CDE70446.1}; TaxID=1262790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:277.;"
phosphofructokinase
Displaying items 1-30 of 134 in total

View Taxonomy