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L3_114_000M1_scaffold_43

Search features with annotation key words

Displaying items 1-30 of 98 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_43_1
unknown

Not on your lists

1..186
DNA (186bp) protein (62aa)

This feature has no annotations

L3_114_000M1_scaffold_43_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

173..430
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L3Q8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL14248.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_43_3
unknown

Not on your lists

427..615
DNA (189bp) protein (63aa)

This feature has no annotations

L3_114_000M1_scaffold_43_4
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

626..865
DNA (240bp) protein (80aa)
Uncharacterized protein n=2 Tax=Clostridium RepID=N9YKH9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENZ12433.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
gp91
L3_114_000M1_scaffold_43_5
unknown

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879..1172
DNA (294bp) protein (98aa)

This feature has no annotations

L3_114_000M1_scaffold_43_6
unknown

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1172..1429
DNA (258bp) protein (86aa)

This feature has no annotations

L3_114_000M1_scaffold_43_7
Lachnospiraceae bacterium 1_4_56FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1516..2328
DNA (813bp) protein (271aa)
Methyltransferase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.- {ECO:0000256|RuleBase:RU362026};; TaxID=658655 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 1_4_56FAA.;"
DNA methylase n=1 Tax=Lachnospiraceae bacterium 1_4_56FAA RepID=F7JKD7_9FIRM
DNA methylase
L3_114_000M1_scaffold_43_8
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2325..3155
DNA (831bp) protein (277aa)
Phage modification methylase n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PS13_CLOSD
Phage modification methylase
Phage modification methylase {ECO:0000313|EMBL:CBH21667.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
L3_114_000M1_scaffold_43_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3184..3441
DNA (258bp) protein (86aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GC17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00661.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_43_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3446..3694
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GC16_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00660.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_43_11
Clostridium sp. CAG:510, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3716..3943
DNA (228bp) protein (76aa)
DNA binding domain excisionase family n=1 Tax=Clostridium sp. CAG:510 RepID=R6C2W3_9CLOT
DNA binding domain excisionase family {ECO:0000313|EMBL:CDA69840.1}; TaxID=1262816 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:510.;"
L3_114_000M1_scaffold_43_12
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3948..5150
DNA (1203bp) protein (401aa)
Site-specific recombinase phage integrase family n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5UBC6_9FIRM
Site-specific recombinase phage integrase family {ECO:0000313|EMBL:CCZ68461.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
integrase family protein
L3_114_000M1_scaffold_43_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5376..6698
DNA (1323bp) protein (441aa)
Metallo-beta-lactamase domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6V1_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EEV02445.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Predicted hydrolase (metallo-beta-lactamase superfamily)
L3_114_000M1_scaffold_43_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6727..7272
DNA (546bp) protein (182aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
2C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=2 Tax=Roseburia RepID=C7G6V0_9FIRM
L3_114_000M1_scaffold_43_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7447..10383
DNA (2937bp) protein (979aa)
Fibronectin type III domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEZ8_9FIRM
Fibronectin type III domain protein {ECO:0000313|EMBL:EEU99632.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Fibronectin type III domain./PT repeat.
L3_114_000M1_scaffold_43_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10457..11764)
DNA (1308bp) protein (436aa)
Diguanylate cyclase (GGDEF) domain n=2 Tax=Roseburia RepID=R6BE79_9FIRM
diguanylate cyclase (GGDEF) domain
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA57386.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_43_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12219..12908
DNA (690bp) protein (230aa)
serine O-acetyltransferase (EC:2.3.1.30)
Serine O-acetyltransferase {ECO:0000313|EMBL:CBL12750.1}; EC=2.3.1.30 {ECO:0000313|EMBL:CBL12750.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Serine acetyltransferase n=3 Tax=Roseburia RepID=D4KZG0_9FIRM
L3_114_000M1_scaffold_43_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13002..14417
DNA (1416bp) protein (472aa)
cysteinyl-tRNA synthetase (EC:6.1.1.16)
Cysteine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043703}; EC=6.1.1.16 {ECO:0000256|HAMAP-Rule:MF_00041, ECO:0000256|SAAS:SAAS00043714};; Cysteinyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00041}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Cysteine--tRNA ligase n=4 Tax=Roseburia RepID=D4KMX4_9FIRM
L3_114_000M1_scaffold_43_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14434..14868
DNA (435bp) protein (145aa)
Mini-ribonuclease 3 {ECO:0000256|HAMAP-Rule:MF_01468}; Short=Mini-3 {ECO:0000256|HAMAP-Rule:MF_01468};; Short=Mini-RNase 3 {ECO:0000256|HAMAP-Rule:MF_01468};; EC=3.1.26.- {ECO:0000256|HAMAP-Rule:MF_01468};; Mini-RNase III {ECO:0000256|HAMAP-Rule:MF_01468}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Mini-ribonuclease 3 n=4 Tax=Roseburia RepID=D4KMX5_9FIRM
hypothetical protein
L3_114_000M1_scaffold_43_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14881..15621
DNA (741bp) protein (247aa)
rRNA methylase, putative, group 3 (EC:2.1.1.-)
rRNA methylase, putative, group 3 {ECO:0000313|EMBL:CBL08228.1}; EC=2.1.1.- {ECO:0000313|EMBL:CBL08228.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
rRNA methylase, putative, group 3 n=3 Tax=Roseburia RepID=D4KMX6_9FIRM
L3_114_000M1_scaffold_43_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15759..16385
DNA (627bp) protein (209aa)
RNA polymerase sigma-H factor n=2 Tax=Roseburia RepID=R6BW21_9FIRM
Putative RNA polymerase sigma-H factor {ECO:0000313|EMBL:EEU99625.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
RNA polymerase, sigma 30 subunit, SigH
L3_114_000M1_scaffold_43_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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16787..18196
DNA (1410bp) protein (470aa)
Phosphomethylpyrimidine synthase {ECO:0000256|HAMAP-Rule:MF_00089}; EC=4.1.99.17 {ECO:0000256|HAMAP-Rule:MF_00089};; Hydroxymethylpyrimidine phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00089}; Thiamine biosynthesis protein ThiC {ECO:0000256|HAMAP-Rule:MF_00089}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Phosphomethylpyrimidine synthase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEZ0_9FIRM
hydroxymethylpyrimidine synthase
L3_114_000M1_scaffold_43_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18262..19605
DNA (1344bp) protein (448aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KZG6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12756.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_43_24
unknown

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19823..20245
DNA (423bp) protein (141aa)

This feature has no annotations

L3_114_000M1_scaffold_43_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20346..22382
DNA (2037bp) protein (679aa)
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BE90_9FIRM
Phosphoglycerol transferase and related proteins alkaline phosphatase superfamily {ECO:0000313|EMBL:CDA57396.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_114_000M1_scaffold_43_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22409..24949
DNA (2541bp) protein (847aa)
Bacterial membrane protein YfhO n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GEY5_9FIRM
Bacterial membrane protein YfhO {ECO:0000313|EMBL:CDA57397.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted membrane protein
L3_114_000M1_scaffold_43_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25011..25475
DNA (465bp) protein (155aa)
Acyl-CoA thioester hydrolase, YbgC/YbaW family n=4 Tax=Roseburia RepID=C7GEY4_9FIRM
conserved hypothetical protein TIGR00051
Uncharacterized protein {ECO:0000313|EMBL:CDA57398.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_43_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25523..27313
DNA (1791bp) protein (597aa)
Xaa-Pro aminopeptidase {ECO:0000313|EMBL:CBL08235.1}; EC=3.4.11.9 {ECO:0000313|EMBL:CBL08235.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Xaa-Pro aminopeptidase (EC:3.4.11.9)
Xaa-Pro aminopeptidase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMY3_9FIRM
L3_114_000M1_scaffold_43_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27336..30116
DNA (2781bp) protein (927aa)
DNA polymerase I {ECO:0000313|EMBL:CBL08236.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBL08236.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase I n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KMY4_9FIRM
L3_114_000M1_scaffold_43_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30058..30813
DNA (756bp) protein (252aa)
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CBL08237.1}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376, ECO:0000313|EMBL:CBL08237.1};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Dephospho-CoA kinase n=2 Tax=Roseburia intestinalis RepID=D4KMY5_9FIRM
Displaying items 1-30 of 98 in total

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