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L3_114_000M1_scaffold_48

Search features with annotation key words

Displaying items 1-30 of 74 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_48_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..2387
DNA (2385bp) protein (795aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
DNA topoisomerase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFF6_9FIRM
DNA topoisomerase
L3_114_000M1_scaffold_48_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2564..3235
DNA (672bp) protein (224aa)
Bacterial transferase hexapeptide repeat protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFF8_9FIRM
Bacterial transferase hexapeptide repeat protein {ECO:0000313|EMBL:EEU99446.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_114_000M1_scaffold_48_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3321..4817
DNA (1497bp) protein (499aa)
Methyl-accepting chemotaxis protein n=2 Tax=Roseburia RepID=D4KX44_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA55038.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_48_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4839..6401
DNA (1563bp) protein (521aa)
Putative uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=D4KRB4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09416.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_48_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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6549..7241
DNA (693bp) protein (231aa)
NifU homolog involved in Fe-S cluster formation n=4 Tax=Roseburia RepID=D4KX46_9FIRM
NifU homolog involved in Fe-S cluster formation
NifU homolog involved in Fe-S cluster formation {ECO:0000313|EMBL:CBL11936.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7260..8270
DNA (1011bp) protein (337aa)
Uncharacterized protein n=3 Tax=Roseburia intestinalis RepID=C7GFG3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL09413.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_48_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8542..10071
DNA (1530bp) protein (510aa)
Nucleotidyltransferase/DNA polymerase involved in DNA repair n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRB0_9FIRM
Nucleotidyltransferase/DNA polymerase involved in DNA repair
Nucleotidyltransferase/DNA polymerase involved in DNA repair {ECO:0000313|EMBL:CDA54795.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_48_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10068..10520
DNA (453bp) protein (151aa)
YolD-like protein n=4 Tax=Roseburia RepID=D4KRA9_9FIRM
YolD-like protein.
YolD-like protein {ECO:0000313|EMBL:CBL11939.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10633..12852
DNA (2220bp) protein (740aa)
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AS18_9FIRM
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain {ECO:0000313|EMBL:CDA54793.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
L3_114_000M1_scaffold_48_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12912..13340
DNA (429bp) protein (143aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX51_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11941.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13337..15484
DNA (2148bp) protein (716aa)
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX52_9FIRM
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain
YhgE/Pip N-terminal domain/YhgE/Pip C-terminal domain {ECO:0000313|EMBL:CBL11942.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15506..15682
DNA (177bp) protein (59aa)
Permease n=3 Tax=Roseburia RepID=R6AUS8_9FIRM
Permease {ECO:0000313|EMBL:CDA54790.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_48_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15798..16322
DNA (525bp) protein (175aa)
acetolactate synthase, small subunit (EC:2.2.1.6)
Acetolactate synthase, small subunit n=4 Tax=Roseburia RepID=D4KRA4_9FIRM
Acetolactate synthase small subunit {ECO:0000313|EMBL:CDA54789.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_48_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16393..17415
DNA (1023bp) protein (341aa)
ketol-acid reductoisomerase (EC:1.1.1.86)
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Ketol-acid reductoisomerase n=4 Tax=Roseburia RepID=D4KRA3_9FIRM
L3_114_000M1_scaffold_48_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


18195..20612
DNA (2418bp) protein (806aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B6X1_9FIRM
L3_114_000M1_scaffold_48_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20614..21957
DNA (1344bp) protein (448aa)
MATE efflux family protein n=2 Tax=Roseburia intestinalis RepID=C7GFH5_9FIRM
putative efflux protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:EEU99420.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_48_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22107..22997)
DNA (891bp) protein (297aa)
Transcriptional regulator, LysR family n=4 Tax=Roseburia RepID=D4KRA0_9FIRM
transcriptional regulator, LysR family
Transcriptional regulator LysR family {ECO:0000313|EMBL:CDA54784.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_48_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23224..24486
DNA (1263bp) protein (421aa)
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01027}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01027};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01027}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
3-isopropylmalate dehydratase, large subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase large subunit n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AS09_9FIRM
L3_114_000M1_scaffold_48_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24510..24998
DNA (489bp) protein (163aa)
3-isopropylmalate dehydratase, small subunit (EC:4.2.1.33)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01032}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01032};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01032}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
3-isopropylmalate dehydratase small subunit n=2 Tax=Roseburia RepID=D4KR98_9FIRM
L3_114_000M1_scaffold_48_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25156..26031)
DNA (876bp) protein (292aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR97_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL09399.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_48_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26301..28463
DNA (2163bp) protein (721aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=4 Tax=Roseburia RepID=C7GFI1_9FIRM
conserved hypothetical protein TIGR02336
Uncharacterized protein {ECO:0000313|EMBL:CBL11952.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28546..29904
DNA (1359bp) protein (453aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR95_9FIRM
Lactose-binding protein {ECO:0000313|EMBL:CDA54779.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_48_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29970..30854
DNA (885bp) protein (295aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=4 Tax=Roseburia RepID=D4KR94_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL09396.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_48_24
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30847..31653
DNA (807bp) protein (269aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=2 Tax=Roseburia RepID=D4KX65_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA54776.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_48_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31650..32114
DNA (465bp) protein (155aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX66_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11956.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_48_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32065..33351
DNA (1287bp) protein (429aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1A0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54774.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_48_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33373..34434)
DNA (1062bp) protein (354aa)
ApbE family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFI7_9FIRM
ApbE family protein {ECO:0000313|EMBL:EEU99432.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Membrane-associated lipoprotein involved in thiamine biosynthesis
L3_114_000M1_scaffold_48_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34688..35539
DNA (852bp) protein (284aa)
glutamate 5-kinase (EC:2.7.2.11)
Glutamate 5-kinase {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442}; EC=2.7.2.11 {ECO:0000256|HAMAP-Rule:MF_00456, ECO:0000256|SAAS:SAAS00186442};; Gamma-glutamyl kinase {ECO:0000256|HAMAP-Rule:MF_00456}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glutamate 5-kinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KX69_9FIRM
L3_114_000M1_scaffold_48_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35591..35815
DNA (225bp) protein (75aa)
UPF0291 protein RO1_13300 n=3 Tax=Roseburia intestinalis RepID=D4KX70_9FIRM
hypothetical protein
UPF0291 protein ROI_24230 {ECO:0000256|HAMAP-Rule:MF_01103}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_48_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35790..36383
DNA (594bp) protein (198aa)
5,10-methenyltetrahydrofolate synthetase (EC:6.3.3.2)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279, ECO:0000313|EMBL:CBL09391.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
5,10-methenyltetrahydrofolate synthetase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR89_9FIRM
Displaying items 1-30 of 74 in total

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