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L3_114_000M1_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 70 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_56_1
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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257..415
DNA (159bp) protein (53aa)
Ribbon-helix-helix protein, copG family n=4 Tax=Roseburia RepID=D4KPE6_9FIRM
Ribbon-helix-helix protein, copG family.
Toxin-antitoxin system protein {ECO:0000313|EMBL:CDA56382.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(548..1687)
DNA (1140bp) protein (380aa)
Protein kinase domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L301_9FIRM
Protein kinase domain.
Protein kinase domain {ECO:0000313|EMBL:CBL13991.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_56_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1831..2265
DNA (435bp) protein (145aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8K7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56384.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2328..3071)
DNA (744bp) protein (248aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
tRNA pseudouridine synthase A n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AZM0_9FIRM
tRNA pseudouridine synthase A
L3_114_000M1_scaffold_56_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3758..4570)
DNA (813bp) protein (271aa)
ABC-type cobalt transport system permease component CbiQ and related transporters n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BSY7_9FIRM
ABC-type cobalt transport system permease component CbiQ and related transporters {ECO:0000313|EMBL:CDA56387.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_114_000M1_scaffold_56_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4588..5466)
DNA (879bp) protein (293aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ABC-type cobalt transport system, ATPase component n=4 Tax=Roseburia RepID=D4L2Z8_9FIRM
ABC-type cobalt transport system, ATPase component
L3_114_000M1_scaffold_56_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5622..6485)
DNA (864bp) protein (288aa)
Energy-coupling factor transporter ATP-binding protein EcfA {ECO:0000256|HAMAP-Rule:MF_01710}; Short=ECF transporter A component EcfA {ECO:0000256|HAMAP-Rule:MF_01710};; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01710};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type cobalt transport system, ATPase component n=3 Tax=Roseburia intestinalis RepID=D4KPE1_9FIRM
ABC-type cobalt transport system, ATPase component
L3_114_000M1_scaffold_56_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6507..7010)
DNA (504bp) protein (168aa)
Predicted rRNA methylase (SpoU class) (EC:2.1.1.-)
Putative tRNA (cytidine(34)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; EC=2.1.1.207 {ECO:0000256|HAMAP-Rule:MF_01885};; tRNA (cytidine/uridine-2'-O-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01885}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Putative tRNA (cytidine(34)-2'-O)-methyltransferase n=4 Tax=Roseburia RepID=D4KPE0_9FIRM
L3_114_000M1_scaffold_56_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7069..8250)
DNA (1182bp) protein (394aa)
Aminotransferase, class I/II {ECO:0000313|EMBL:EEV01876.1}; EC=2.6.1.- {ECO:0000313|EMBL:EEV01876.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Aspartate/tyrosine/aromatic aminotransferase n=4 Tax=Roseburia RepID=D4KPD9_9FIRM
Aspartate/tyrosine/aromatic aminotransferase
L3_114_000M1_scaffold_56_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8252..8728)
DNA (477bp) protein (159aa)
Transcriptional regulators n=4 Tax=Roseburia RepID=D4L2Z4_9FIRM
Transcriptional regulators
Transcriptional regulators {ECO:0000313|EMBL:CBL13984.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_56_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8849..9832)
DNA (984bp) protein (328aa)
Hydrogenase maturation factor n=4 Tax=Roseburia RepID=D4L2Z3_9FIRM
Hydrogenase maturation factor
Uncharacterized protein {ECO:0000313|EMBL:EEV01874.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_56_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9906..11450)
DNA (1545bp) protein (515aa)
Uncharacterized vancomycin resistance protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPD6_9FIRM
Uncharacterized vancomycin resistance protein
Uncharacterized vancomycin resistance protein {ECO:0000313|EMBL:CBL08738.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_56_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11590..11694)
DNA (105bp) protein (35aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B5T4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08736.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_56_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11742..12368
DNA (627bp) protein (209aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2Y9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL13979.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_56_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12416..13123)
DNA (708bp) protein (236aa)
exonuclease, DNA polymerase III, epsilon subunit family (EC:2.7.7.7)
Exonuclease, DNA polymerase III, epsilon subunit family {ECO:0000313|EMBL:CBL08734.1}; EC=2.7.7.7 {ECO:0000313|EMBL:CBL08734.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Exonuclease, DNA polymerase III, epsilon subunit family n=2 Tax=Roseburia RepID=D4KPD2_9FIRM
L3_114_000M1_scaffold_56_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13101..15218)
DNA (2118bp) protein (706aa)
Fe-S oxidoreductase (EC:4.-.-.-)
Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWW3_9FIRM
Magnesium-protoporphyrin IX monomethyl ester oxidative cyclase {ECO:0000313|EMBL:CDA56403.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15173..15751)
DNA (579bp) protein (193aa)
Predicted membrane protein n=3 Tax=Roseburia intestinalis RepID=D4KPD0_9FIRM
Predicted membrane protein
Predicted membrane protein {ECO:0000313|EMBL:CBL08732.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_56_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15776..18460)
DNA (2685bp) protein (895aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01868.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
X-X-X-Leu-X-X-Gly heptad repeats
L3_114_000M1_scaffold_56_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18480..20609)
DNA (2130bp) protein (710aa)
Predicted exporters of the RND superfamily n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2Y6_9FIRM
Predicted exporters of the RND superfamily {ECO:0000313|EMBL:CBL13976.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Predicted exporters of the RND superfamily
L3_114_000M1_scaffold_56_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20764..21330)
DNA (567bp) protein (189aa)
Transcriptional regulator n=4 Tax=Roseburia RepID=D4KPC7_9FIRM
Transcriptional regulator
Putative dihydroxyacetone kinase regulator {ECO:0000313|EMBL:EEV01866.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_56_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21349..22401)
DNA (1053bp) protein (351aa)
HD-GYP domain n=2 Tax=Roseburia RepID=R6B5U2_9FIRM
HD-GYP domain {ECO:0000313|EMBL:CDA56409.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
HD-GYP domain
L3_114_000M1_scaffold_56_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22444..22674)
DNA (231bp) protein (77aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8I7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56410.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22796..24397
DNA (1602bp) protein (534aa)
Diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L2Y2_9FIRM
Diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG {ECO:0000313|EMBL:CBL13972.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
diguanylate cyclase (GGDEF) domain/uncharacterized domain HDIG
L3_114_000M1_scaffold_56_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24490..25083)
DNA (594bp) protein (198aa)
Uncharacterized conserved protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPC3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01862.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_114_000M1_scaffold_56_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25261..25761
DNA (501bp) protein (167aa)
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase {ECO:0000256|PIRNR:PIRNR006181}; EC=4.2.-.- {ECO:0000256|PIRNR:PIRNR006181};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPC1_9FIRM
ybaK/ebsC protein
L3_114_000M1_scaffold_56_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25845..26759)
DNA (915bp) protein (305aa)
Uncharacterized protein n=4 Tax=Roseburia RepID=C7G8I3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56421.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26850..29531)
DNA (2682bp) protein (894aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC (EC:3.6.3.8)
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:CBL08720.1}; EC=3.6.3.8 {ECO:0000313|EMBL:CBL08720.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ATPase, P-type (Transporting), HAD superfamily, subfamily IC n=2 Tax=Roseburia intestinalis RepID=D4KPB8_9FIRM
L3_114_000M1_scaffold_56_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29630..31318)
DNA (1689bp) protein (563aa)
Methyl-accepting chemotaxis protein n=2 Tax=Roseburia intestinalis RepID=D4L2X5_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CBL13965.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_56_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31498..31596)
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B5V4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56424.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_56_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31860..33974)
DNA (2115bp) protein (705aa)
Glycosidases {ECO:0000313|EMBL:CBL08719.1}; EC=3.2.1.20 {ECO:0000313|EMBL:CBL08719.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Glycosidases (EC:3.2.1.20)
Glycosidases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KPB7_9FIRM
Displaying items 1-30 of 70 in total

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