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L3_114_000M1_scaffold_84

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_84_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(192..1295)
DNA (1104bp) protein (368aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chorismate synthase (EC:4.2.3.5)
Chorismate synthase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV76_9FIRM
L3_114_000M1_scaffold_84_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1438..2766
DNA (1329bp) protein (443aa)
3-phosphoshikimate 1-carboxyvinyltransferase (EC:2.5.1.19)
3-phosphoshikimate 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240549}; EC=2.5.1.19 {ECO:0000256|HAMAP-Rule:MF_00210, ECO:0000256|SAAS:SAAS00240533};; 5-enolpyruvylshikimate-3-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00210}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
3-phosphoshikimate 1-carboxyvinyltransferase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV78_9FIRM
L3_114_000M1_scaffold_84_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2904..4058
DNA (1155bp) protein (385aa)
tRNA-guanine transglycosylase (EC:2.4.2.29)
Queuine tRNA-ribosyltransferase {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777}; EC=2.4.2.29 {ECO:0000256|HAMAP-Rule:MF_00168, ECO:0000256|RuleBase:RU003777};; Guanine insertion enzyme {ECO:0000256|HAMAP-Rule:MF_00168}; tRNA-guanine transglycosylase {ECO:0000256|HAMAP-Rule:MF_00168}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Queuine tRNA-ribosyltransferase n=2 Tax=Roseburia intestinalis RepID=D4KNK7_9FIRM
L3_114_000M1_scaffold_84_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4159..4482
DNA (324bp) protein (108aa)
Protein translocase subunit yajC n=4 Tax=Roseburia RepID=D4KNK8_9FIRM
protein translocase subunit yajC
Protein translocase subunit yajC {ECO:0000313|EMBL:CBL11270.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_84_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4607..5515
DNA (909bp) protein (303aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6BUE6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56872.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_84_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5529..6464
DNA (936bp) protein (312aa)
Helix-turn-helix n=2 Tax=Roseburia RepID=D4KV82_9FIRM
Helix-turn-helix.
Helix-turn-helix {ECO:0000313|EMBL:CDA56871.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_84_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6789..6947
DNA (159bp) protein (53aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=R6B0Y2_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56870.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_84_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7045..8271
DNA (1227bp) protein (409aa)
Predicted Fe-S oxidoreductases n=2 Tax=Roseburia RepID=D4KV85_9FIRM
Predicted Fe-S oxidoreductases
Predicted Fe-S oxidoreductases {ECO:0000313|EMBL:CBL11275.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_84_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8264..9940
DNA (1677bp) protein (559aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV86_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL11276.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_84_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10260..11360
DNA (1101bp) protein (367aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85)
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
3-isopropylmalate dehydrogenase n=5 Tax=Roseburia RepID=D4KNL5_9FIRM
L3_114_000M1_scaffold_84_11
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11393..13069
DNA (1677bp) protein (559aa)
Dihydroxy-acid dehydratase {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040}; Short=DAD {ECO:0000256|HAMAP-Rule:MF_00012};; EC=4.2.1.9 {ECO:0000256|HAMAP-Rule:MF_00012, ECO:0000256|SAAS:SAAS00023040};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
dihydroxy-acid dehydratase (EC:4.2.1.9)
Dihydroxy-acid dehydratase n=4 Tax=Roseburia RepID=D4KV88_9FIRM
L3_114_000M1_scaffold_84_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13178..14866
DNA (1689bp) protein (563aa)
Acetolactate synthase {ECO:0000256|RuleBase:RU003591}; EC=2.2.1.6 {ECO:0000256|RuleBase:RU003591, ECO:0000313|EMBL:CBL11279.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
acetolactate synthase, large subunit, biosynthetic type (EC:2.2.1.6)
Acetolactate synthase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV89_9FIRM
L3_114_000M1_scaffold_84_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14887..15969
DNA (1083bp) protein (361aa)
phosphoserine aminotransferase (EC:2.6.1.52)
Phosphoserine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL11280.1}; EC=2.6.1.52 {ECO:0000256|HAMAP-Rule:MF_00160, ECO:0000313|EMBL:CBL11280.1};; Phosphohydroxythreonine aminotransferase {ECO:0000256|HAMAP-Rule:MF_00160}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Phosphoserine aminotransferase n=2 Tax=Roseburia RepID=D4KV90_9FIRM
L3_114_000M1_scaffold_84_14
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15969..17132
DNA (1164bp) protein (388aa)
Phosphoglycerate dehydrogenase and related dehydrogenases (EC:1.1.1.95)
Phosphoglycerate dehydrogenase and related dehydrogenases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUV1_9FIRM
Phosphoglycerate dehydrogenase and related dehydrogenases {ECO:0000313|EMBL:CDA54810.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_84_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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17265..18515
DNA (1251bp) protein (417aa)
Uncharacterized conserved protein n=3 Tax=Roseburia intestinalis RepID=D4KNM0_9FIRM
hypothetical protein
Uncharacterized conserved protein {ECO:0000313|EMBL:CBL08472.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_84_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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18671..19585
DNA (915bp) protein (305aa)
Small-conductance mechanosensitive channel n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BNA1_9FIRM
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CDA54812.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Small-conductance mechanosensitive channel
L3_114_000M1_scaffold_84_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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19821..20024
DNA (204bp) protein (68aa)
Cold-shock DNA-binding protein family n=3 Tax=Roseburia intestinalis RepID=D4KNM2_9FIRM
cold-shock DNA-binding protein family
Cold shock protein CspA {ECO:0000313|EMBL:EEV01146.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_84_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20277..23207
DNA (2931bp) protein (977aa)
Predicted Zn-dependent peptidases, insulinase-like n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KV95_9FIRM
Predicted Zn-dependent peptidases, insulinase-like {ECO:0000313|EMBL:CBL11285.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Predicted Zn-dependent peptidases, insulinase-like
L3_114_000M1_scaffold_84_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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23226..24134
DNA (909bp) protein (303aa)
GTPase Era n=4 Tax=Roseburia RepID=D4KNM4_9FIRM
GTP-binding protein Era
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_84_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24220..24399
DNA (180bp) protein (60aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AS33_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54818.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_84_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24338..25102
DNA (765bp) protein (255aa)
DNA repair protein RecO n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KNM5_9FIRM
DNA replication and repair protein RecO
DNA repair protein RecO {ECO:0000256|HAMAP-Rule:MF_00201, ECO:0000256|SAAS:SAAS00018750}; Recombination protein O {ECO:0000256|HAMAP-Rule:MF_00201}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_84_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25169..25921
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GAH4_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL08478.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_84_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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25975..27372
DNA (1398bp) protein (466aa)
glycyl-tRNA synthetase, dimeric type (EC:6.1.1.14)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00253}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Glycine--tRNA ligase n=4 Tax=Roseburia RepID=D4KNM7_9FIRM
L3_114_000M1_scaffold_84_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27379..28905
DNA (1527bp) protein (509aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GAH6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV01153.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_114_000M1_scaffold_84_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28915..30174
DNA (1260bp) protein (420aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1F1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54829.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_84_26
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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30233..33037
DNA (2805bp) protein (935aa)
Predicted membrane protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AUX1_9FIRM
Predicted membrane protein {ECO:0000313|EMBL:CDA54830.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted membrane protein
L3_114_000M1_scaffold_84_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32991..34064
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BNC4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54832.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Acyltransferase family.
L3_114_000M1_scaffold_84_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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34174..35274
DNA (1101bp) protein (367aa)
Heat-inducible transcription repressor hrcA n=3 Tax=Roseburia RepID=D4KNN1_9FIRM
heat-inducible transcription repressor HrcA
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_84_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35290..35925
DNA (636bp) protein (212aa)
Protein GrpE n=2 Tax=Roseburia RepID=C7GAI1_9FIRM
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Molecular chaperone GrpE (heat shock protein)
L3_114_000M1_scaffold_84_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35961..37844
DNA (1884bp) protein (628aa)
Chaperone protein DnaK n=3 Tax=Roseburia RepID=D4KVA4_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
chaperone protein DnaK
Displaying items 1-30 of 54 in total

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