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L3_114_000M1_scaffold_104

Search features with annotation key words

Displaying items 1-30 of 61 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_104_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(201..1076)
DNA (876bp) protein (292aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KS09_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CBL09661.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_104_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1603..3357
DNA (1755bp) protein (585aa)
ABC transporter permease/ATP-binding protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B584_9FIRM
ABC transporter permease/ATP-binding protein {ECO:0000313|EMBL:CDA56189.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_104_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3359..5143
DNA (1785bp) protein (595aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWF4_9FIRM
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBL11694.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_104_4
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5310..6863)
DNA (1554bp) protein (518aa)
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain n=2 Tax=Roseburia RepID=D4KWF5_9FIRM
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain
Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain {ECO:0000313|EMBL:CDA56191.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7107..9446
DNA (2340bp) protein (780aa)
Alpha-glucosidases family 31 of glycosyl hydrolases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AWC8_9FIRM
Alpha-glucosidases family 31 of glycosyl hydrolases {ECO:0000313|EMBL:CDA56193.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases
L3_114_000M1_scaffold_104_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9446..11599
DNA (2154bp) protein (718aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase-related glycosidases n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B589_9FIRM
Beta-glucosidase-related glycosidases {ECO:0000313|EMBL:CDA56194.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11689..13875
DNA (2187bp) protein (729aa)
Diguanylate cyclase (GGDEF) domain n=2 Tax=Roseburia RepID=R6AYV9_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA56195.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_104_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13883..14239
DNA (357bp) protein (119aa)
Hpt domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWF9_9FIRM
Hpt domain.
Hpt domain {ECO:0000313|EMBL:CBL11699.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_104_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14245..14931
DNA (687bp) protein (229aa)
Phosphopantetheinyl transferase n=2 Tax=Roseburia RepID=D4KWG0_9FIRM
Phosphopantetheinyl transferase {ECO:0000313|EMBL:CDA56198.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Phosphopantetheinyl transferase
L3_114_000M1_scaffold_104_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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14990..15493
DNA (504bp) protein (168aa)
Transcription elongation factor GreA n=3 Tax=Roseburia RepID=D4KWG1_9FIRM
transcription elongation factor GreA
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15509..16381
DNA (873bp) protein (291aa)
5,10-methylenetetrahydrofolate reductase, prokaryotic form (EC:1.5.1.20)
Methylenetetrahydrofolate reductase {ECO:0000256|RuleBase:RU003862}; EC=1.5.1.20 {ECO:0000256|RuleBase:RU003862};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methylenetetrahydrofolate reductase n=4 Tax=Roseburia RepID=D4KRZ9_9FIRM
L3_114_000M1_scaffold_104_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16463..16939
DNA (477bp) protein (159aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7GI32_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EEU98523.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_104_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16991..17854
DNA (864bp) protein (288aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BSC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56202.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_104_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18012..18920)
DNA (909bp) protein (303aa)
AhpC/TSA family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRZ7_9FIRM
AhpC/TSA family.
AhpC/TSA family {ECO:0000313|EMBL:CBL09649.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_104_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18969..19868)
DNA (900bp) protein (300aa)
Iron-sulfur cluster-binding protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B597_9FIRM
Iron-sulfur cluster-binding protein {ECO:0000313|EMBL:CDA56204.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
putative iron-sulfur-binding membrane protein
L3_114_000M1_scaffold_104_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20136..20783
DNA (648bp) protein (216aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=4 Tax=Roseburia RepID=D4KRZ6_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CDA56205.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20780..21928
DNA (1149bp) protein (383aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G7J5_9FIRM
Signal transduction histidine kinase
L3_114_000M1_scaffold_104_18
unknown

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22256..22402
DNA (147bp) protein (49aa)

This feature has no annotations

L3_114_000M1_scaffold_104_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22581..23381
DNA (801bp) protein (267aa)
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:CBL09644.1}; EC=2.7.4.7 {ECO:0000313|EMBL:CBL09644.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phosphomethylpyrimidine kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KRZ2_9FIRM
L3_114_000M1_scaffold_104_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23378..24562
DNA (1185bp) protein (395aa)
Probable hydroxymethylpyrimidine transporter CytX n=2 Tax=Roseburia intestinalis RepID=D4KRZ1_9FIRM
probable hydroxymethylpyrimidine transporter CytX
Probable hydroxymethylpyrimidine transporter CytX {ECO:0000313|EMBL:CBL09643.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_104_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24633..25145
DNA (513bp) protein (171aa)
ThiW protein n=4 Tax=Roseburia RepID=D4KRZ0_9FIRM
thiW protein
Protein ThiW {ECO:0000313|EMBL:EEV02224.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_104_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25508..25978
DNA (471bp) protein (157aa)
Acetyltransferases n=3 Tax=Roseburia RepID=D4KRY9_9FIRM
Acetyltransferases
Acetyltransferases {ECO:0000313|EMBL:CBL09641.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_104_23
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26002..26151
DNA (150bp) protein (50aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6BAT5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA56216.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26337..26498
DNA (162bp) protein (54aa)
Uncharacterized protein n=2 Tax=Roseburia intestinalis RepID=C7G7I1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11714.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_104_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26560..28068)
DNA (1509bp) protein (503aa)
UPF0272 protein RO1_10590 n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWH5_9FIRM
UPF0272 protein RO1_10590 {ECO:0000256|HAMAP-Rule:MF_01074}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
conserved hypothetical protein TIGR00299
L3_114_000M1_scaffold_104_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(28116..28919)
DNA (804bp) protein (268aa)
NCAIR mutase (PurE)-related proteins n=3 Tax=Roseburia intestinalis RepID=D4KRY6_9FIRM
NCAIR mutase (PurE)-related proteins
NCAIR mutase (PurE)-related proteins {ECO:0000313|EMBL:CBL09638.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_104_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29301..29867
DNA (567bp) protein (189aa)
Transcriptional regulator n=3 Tax=Roseburia RepID=D4KWH7_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CDA56219.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_104_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29873..32314
DNA (2442bp) protein (814aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Beta-galactosidase/beta-glucuronidase {ECO:0000313|EMBL:CBL11718.1}; EC=3.2.1.23 {ECO:0000313|EMBL:CBL11718.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Beta-galactosidase/beta-glucuronidase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KWH8_9FIRM
L3_114_000M1_scaffold_104_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32397..33866
DNA (1470bp) protein (490aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BAT7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56221.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_104_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34090..35463
DNA (1374bp) protein (458aa)
Sugar (Glycoside-Pentoside-Hexuronide) transporter n=3 Tax=Roseburia RepID=D4KWI0_9FIRM
sugar (Glycoside-Pentoside-Hexuronide) transporter
Sugar (Glycoside-Pentoside-Hexuronide) transporter {ECO:0000313|EMBL:CBL11720.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Displaying items 1-30 of 61 in total

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