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L3_114_000M1_scaffold_123

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_123_1
Eubacterium sp. 14-2, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

181..444
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. 14-2 RepID=S0J704_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EOT23508.1}; TaxID=1235790 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 14-2.;"
L3_114_000M1_scaffold_123_2
Veillonella sp. CAG:933, Veillonella, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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448..870
DNA (423bp) protein (141aa)
Uncharacterized protein n=1 Tax=Veillonella sp. CAG:933 RepID=R5BM82_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX55279.1}; TaxID=1262980 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Veillonella; environmental samples.;" source="Veillonella sp. CAG:933.;"
L3_114_000M1_scaffold_123_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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961..1893
DNA (933bp) protein (311aa)
PAP_fibrillin n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN3_9FIRM
PAP_fibrillin.
PAP_fibrillin {ECO:0000313|EMBL:CBL11073.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_4

Not on your lists

1993..3270
DNA (1278bp) protein (426aa)
Transposase IS116/IS110/IS902 family protein n=1 Tax=human gut metagenome RepID=K1SF58_9ZZZZ
Transposase IS116/IS110/IS902 family protein {ECO:0000313|EMBL:EKC46046.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Transposase and inactivated derivatives
L3_114_000M1_scaffold_123_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3630..4025
DNA (396bp) protein (132aa)
PAP_fibrillin n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN3_9FIRM
PAP_fibrillin.
PAP_fibrillin {ECO:0000313|EMBL:CBL11073.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4348..5325
DNA (978bp) protein (326aa)
Putative transposase, YhgA-like n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLR3_9FIRM
Putative transposase, YhgA-like.
Putative transposase, YhgA-like {ECO:0000313|EMBL:CBL07815.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_123_7
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5432..7963
DNA (2532bp) protein (844aa)
Putative uncharacterized protein n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T545_ROSHA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN97533.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_123_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8196..9473
DNA (1278bp) protein (426aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11077.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9467..9640
DNA (174bp) protein (58aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11078.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9688..10785
DNA (1098bp) protein (366aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUN9_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11079.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_11
Clostridiales bacterium 1_7_47FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10878..12143
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EVS3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEQ62226.1}; TaxID=457421 species="Bacteria; Firmicutes; Clostridia; Clostridiales.;" source="Clostridiales bacterium 1_7_47FAA.;"
ATPase AAA
L3_114_000M1_scaffold_123_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12143..12802
DNA (660bp) protein (220aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUP0_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11080.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13116..14924
DNA (1809bp) protein (603aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE06_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99951.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_123_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14924..16717
DNA (1794bp) protein (598aa)
ABC transporter, ATP-binding protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GE05_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU99950.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_123_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16793..17272
DNA (480bp) protein (160aa)
ADP-ribose pyrophosphatase (EC:3.6.1.-)
ADP-ribose pyrophosphatase {ECO:0000313|EMBL:CBL11082.1}; EC=3.6.1.- {ECO:0000313|EMBL:CBL11082.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ADP-ribose pyrophosphatase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUP2_9FIRM
L3_114_000M1_scaffold_123_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17298..18341
DNA (1044bp) protein (348aa)
Putative HAM1 protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AYL0_9FIRM
Putative HAM1 protein {ECO:0000313|EMBL:CDA53964.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Xanthosine triphosphate pyrophosphatase
L3_114_000M1_scaffold_123_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18499..19854
DNA (1356bp) protein (452aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Trigger factor n=3 Tax=Roseburia RepID=D4KSE8_9FIRM
trigger factor
L3_114_000M1_scaffold_123_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19972..20553
DNA (582bp) protein (194aa)
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
ATP-dependent Clp protease proteolytic subunit n=4 Tax=Roseburia RepID=D4KSE9_9FIRM
L3_114_000M1_scaffold_123_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20574..21845
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=4 Tax=Roseburia RepID=D4KSF0_9FIRM
endopeptidase Clp ATP-binding regulatory subunit (clpX)
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_123_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21838..24162
DNA (2325bp) protein (775aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Lon protease n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GDZ9_9FIRM
ATP-dependent protease La
L3_114_000M1_scaffold_123_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24240..24839
DNA (600bp) protein (200aa)
Probable GTP-binding protein EngB n=2 Tax=Roseburia intestinalis RepID=D4KSF1_9FIRM
ribosome biogenesis GTP-binding protein YsxC/EngB
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321, ECO:0000256|SAAS:SAAS00023450}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24998..25930
DNA (933bp) protein (311aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=4 Tax=Roseburia RepID=D4KSF2_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723, ECO:0000313|EMBL:CBL11087.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26001..27779
DNA (1779bp) protein (593aa)
pyruvate kinase (EC:2.7.1.40)
Pyruvate kinase {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1}; EC=2.7.1.40 {ECO:0000256|RuleBase:RU000504, ECO:0000313|EMBL:CBL09805.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Pyruvate kinase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF3_9FIRM
L3_114_000M1_scaffold_123_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27846..29216)
DNA (1371bp) protein (457aa)
Putative efflux protein, MATE family n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KSF4_9FIRM
putative efflux protein, MATE family
Putative efflux protein, MATE family {ECO:0000313|EMBL:CBL09806.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_123_25
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29349..30182
DNA (834bp) protein (278aa)
Transcriptional regulator, AraC family n=3 Tax=Roseburia RepID=D4KSF5_9FIRM
transcriptional regulator, AraC family
L-rhamnose operon transcriptional activator {ECO:0000313|EMBL:CDA53955.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_123_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30250..32694)
DNA (2445bp) protein (815aa)
cellobiose phosphorylase (EC:2.4.1.20)
Cellobiose phosphorylase {ECO:0000313|EMBL:CBL11091.1}; EC=2.4.1.20 {ECO:0000313|EMBL:CBL11091.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Cellobiose phosphorylase n=2 Tax=Roseburia intestinalis RepID=D4KUQ1_9FIRM
L3_114_000M1_scaffold_123_27
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33131..34141
DNA (1011bp) protein (337aa)
Transcriptional regulator, LacI family n=3 Tax=Roseburia RepID=D4KSF7_9FIRM
transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEU99965.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_123_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34275..35711
DNA (1437bp) protein (479aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KUQ3_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL11093.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_123_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35912..36826
DNA (915bp) protein (305aa)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6APG0_9FIRM
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53943.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_123_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36823..37692
DNA (870bp) protein (290aa)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) n=2 Tax=Roseburia RepID=R6BKU2_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA53942.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Displaying items 1-30 of 49 in total

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