ggKbase home page

L3_114_000M1_scaffold_124

Search features with annotation key words

Displaying items 1-30 of 54 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_124_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..501)
DNA (501bp) protein (167aa)
ATP binding protein of ABC transporter n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZH5_BIFBR
ATP-binding and permeaase modules of ABC transporter system
ATP-binding and permeaase modules of ABC transporter system {ECO:0000313|EMBL:AHJ18696.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L3_114_000M1_scaffold_124_2
unknown

Not on your lists

comp(462..611)
DNA (150bp) protein (50aa)

This feature has no annotations

L3_114_000M1_scaffold_124_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1231..1512)
DNA (282bp) protein (94aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2CSA0_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:ERI87405.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Glucose/fructose transport protein
L3_114_000M1_scaffold_124_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1620..1877)
DNA (258bp) protein (86aa)
Uncharacterized protein n=2 Tax=Bifidobacterium breve RepID=S2ZQY2_BIFBR
Uncharacterized protein {ECO:0000313|EMBL:EPD76735.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Glucose/fructose transport protein
L3_114_000M1_scaffold_124_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2233..4056
DNA (1824bp) protein (608aa)
AMP-binding enzyme n=2 Tax=Bifidobacterium breve RepID=F6C7H6_BIFBA
Long-chain-fatty-acid--CoA ligase
AMP-binding enzyme {ECO:0000313|EMBL:EFE90033.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_114_000M1_scaffold_124_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4136..5257)
DNA (1122bp) protein (374aa)
Transcriptional regulator, LacI family n=3 Tax=Bifidobacterium breve RepID=F9Y1T9_BIFBU
Transcriptional regulator, LacI family
Transcriptional regulator, LacI family {ECO:0000313|EMBL:ABE95111.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_114_000M1_scaffold_124_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(5419..6276)
DNA (858bp) protein (286aa)
Ribonuclease {ECO:0000256|RuleBase:RU003515}; EC=3.1.26.- {ECO:0000256|RuleBase:RU003515};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Ribonuclease n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BML0_BIFBR
Ribonuclease HII
L3_114_000M1_scaffold_124_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6304..7227)
DNA (924bp) protein (308aa)
lepB; Signal peptidase I (EC:3.4.21.89)
Signal peptidase I {ECO:0000256|RuleBase:RU362042}; EC=3.4.21.89 {ECO:0000256|RuleBase:RU362042};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Signal peptidase I n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y1T7_BIFBU
L3_114_000M1_scaffold_124_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(7396..7845)
DNA (450bp) protein (150aa)
50S ribosomal protein L19 n=2 Tax=Bifidobacterium breve RepID=H3KZI2_BIFBR
LSU ribosomal protein L19P
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_114_000M1_scaffold_124_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

8553..10343
DNA (1791bp) protein (597aa)
ABC transporter, permease protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BMK5_BIFBR
Permease protein of ABC transporter system
ABC transporter, permease protein {ECO:0000313|EMBL:EFE90024.1}; Nitrate ABC transporter permease component {ECO:0000313|EMBL:BAQ99385.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_114_000M1_scaffold_124_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10473..11891
DNA (1419bp) protein (473aa)
ATP-binding protein of ABC transporter system n=2 Tax=Bifidobacterium breve RepID=F9Y1T4_BIFBU
ATP-binding protein of ABC transporter system
ATP-binding protein of ABC transporter system {ECO:0000313|EMBL:ABE95106.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_114_000M1_scaffold_124_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(12602..14302)
DNA (1701bp) protein (567aa)
gpi; Glucose-6-phosphate isomerase (EC:5.3.1.9)
Glucose-6-phosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612}; Short=GPI {ECO:0000256|HAMAP-Rule:MF_00473};; EC=5.3.1.9 {ECO:0000256|HAMAP-Rule:MF_00473, ECO:0000256|RuleBase:RU000612};; Phosphoglucose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; Phosphohexose isomerase {ECO:0000256|HAMAP-Rule:MF_00473}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
Glucose-6-phosphate isomerase n=5 Tax=Bifidobacterium breve RepID=F6C7G8_BIFBA
L3_114_000M1_scaffold_124_13
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

15177..16178
DNA (1002bp) protein (334aa)
Transporter, auxin efflux carrier family n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3KZI7_BIFBR
putative membrane spanning protein with auxin efflux carrier domain
Putative membrane spanning protein with auxin efflux carrier domain {ECO:0000313|EMBL:AHJ20610.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_114_000M1_scaffold_124_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16304..17077)
DNA (774bp) protein (258aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Non-canonical purine NTP pyrophosphatase n=2 Tax=Bifidobacterium breve RepID=F9Y1T1_BIFBU
Conserved hypothetical protein with HAM1 family domain
L3_114_000M1_scaffold_124_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17202..17978)
DNA (777bp) protein (259aa)
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
Ribonuclease PH n=5 Tax=Bifidobacterium breve RepID=F6C7G5_BIFBA
Ribonuclease PH
L3_114_000M1_scaffold_124_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18516..19838)
DNA (1323bp) protein (441aa)
Nicotinate phosphoribosyltransferase {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163}; EC=6.3.4.21 {ECO:0000256|RuleBase:RU003838, ECO:0000256|SAAS:SAAS00075163};; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
Nicotinate phosphoribosyltransferase n=2 Tax=Bifidobacterium breve RepID=F6C7G4_BIFBA
Nicotinate phosphoribosyltransferase
L3_114_000M1_scaffold_124_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

19946..20572
DNA (627bp) protein (209aa)
Uncharacterized protein n=3 Tax=Bifidobacterium breve RepID=H3KZJ1_BIFBR
putative membrane spanning protein
Putative membrane spanning protein {ECO:0000313|EMBL:AHJ20606.1}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_114_000M1_scaffold_124_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(20580..21008)
DNA (429bp) protein (143aa)
Transcriptional regulator, MerR family n=3 Tax=Bifidobacterium breve RepID=F6C7G2_BIFBA
Transcriptional regulator, MerR family
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AHJ18681.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L3_114_000M1_scaffold_124_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21267..22277
DNA (1011bp) protein (337aa)
Oxidoreductase {ECO:0000313|EMBL:ABE95098.1}; EC=1.1.1.- {ECO:0000313|EMBL:ABE95098.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Oxidoreductase n=3 Tax=Bifidobacterium breve RepID=F9Y1J6_BIFBU
Oxidoreductase
L3_114_000M1_scaffold_124_20
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(22424..23359)
DNA (936bp) protein (312aa)
PF06675 family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AR36_BIFLN
Uncharacterized protein {ECO:0000313|EMBL:KEY23427.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Hypothetical protein with DUF1177 domain
L3_114_000M1_scaffold_124_21
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23373..24941)
DNA (1569bp) protein (523aa)
Hydantoinase/oxoprolinase n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AR25_BIFLN
Putative hydantoinase/oxoprolinase
Hydantoinase/oxoprolinase {ECO:0000313|EMBL:KFI72751.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_114_000M1_scaffold_124_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24944..26041)
DNA (1098bp) protein (366aa)
PF06032 family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AR08_BIFLN
Hypothetical protein with the DUF917 domain
Uncharacterized protein {ECO:0000313|EMBL:KEY23429.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_114_000M1_scaffold_124_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(26110..27213)
DNA (1104bp) protein (368aa)
PF06032 family protein n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AR00_BIFLN
Hypothetical protein with DUF917 domain
Uncharacterized protein {ECO:0000313|EMBL:KEY23430.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_114_000M1_scaffold_124_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(27215..28579)
DNA (1365bp) protein (455aa)
Permease, cytosine/purine, uracil, thiamine, allantoin family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AQY8_BIFLN
putative permease for cytosine/purines, uracil, thiamine, allantoin
Permease, cytosine/purine, uracil, thiamine, allantoin family {ECO:0000313|EMBL:EIJ21531.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_114_000M1_scaffold_124_25
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(28698..29510)
DNA (813bp) protein (271aa)
Hydrolase, carbon-nitrogen family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AQZ1_BIFLN
Hydrolase, carbon-nitrogen family {ECO:0000313|EMBL:EIJ21534.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
apolipoprotein N-acyltransferase
L3_114_000M1_scaffold_124_26
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(29523..30935)
DNA (1413bp) protein (471aa)
Permease, cytosine/purine, uracil, thiamine, allantoin family n=2 Tax=Bifidobacterium longum subsp. longum RepID=I3AR12_BIFLN
Permease, cytosine/purine, uracil, thiamine, allantoin family {ECO:0000313|EMBL:EIJ21555.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
Putative permease for cytosine/purines, uracil, thiamine, allantoin
L3_114_000M1_scaffold_124_27
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(31304..31585)
DNA (282bp) protein (94aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DTL3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KFI72757.1}; TaxID=1695 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. suis.;"
L3_114_000M1_scaffold_124_28
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

31690..32190
DNA (501bp) protein (167aa)
Phosphopantetheine adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109024}; EC=2.7.7.3 {ECO:0000256|HAMAP-Rule:MF_00151, ECO:0000256|SAAS:SAAS00109037};; Dephospho-CoA pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00151}; Pantetheine-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00151}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Phosphopantetheine adenylyltransferase n=6 Tax=Bifidobacterium breve RepID=F6C7F9_BIFBA
Phosphopantetheine adenylyltransferase
L3_114_000M1_scaffold_124_29
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32196..32981
DNA (786bp) protein (262aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BMJ2_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHJ18677.1}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
L3_114_000M1_scaffold_124_30
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33097..33717
DNA (621bp) protein (207aa)
Putative ACR, COG1399 n=2 Tax=Bifidobacterium breve RepID=F6C7F7_BIFBA
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABE95094.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Displaying items 1-30 of 54 in total

View Taxonomy