ggKbase home page

L3_114_000M1_scaffold_140

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_140_1
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(382..507)
DNA (126bp) protein (42aa)
Uncharacterized protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LNI3_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39626.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_140_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2019..3647
DNA (1629bp) protein (543aa)
LPXTG-motif cell wall anchor domain protein n=3 Tax=Firmicutes RepID=E4LNI4_9CLOT
Fimbrial isopeptide formation D2 domain protein {ECO:0000313|EMBL:EQJ62762.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_140_3
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3655..4479
DNA (825bp) protein (275aa)
Sortase family protein n=2 Tax=Clostridiales RepID=E4LNI5_9CLOT
Sortase family protein {ECO:0000313|EMBL:EFR39622.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_114_000M1_scaffold_140_4
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4476..5309
DNA (834bp) protein (278aa)
Sortase family protein {ECO:0000313|EMBL:EQJ63728.1}; EC=3.4.22.- {ECO:0000313|EMBL:EQJ63728.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Sortase family protein n=4 Tax=Firmicutes RepID=E4LNI6_9CLOT
LPXTG-site transpeptidase (sortase) family protein
L3_114_000M1_scaffold_140_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5677..9912
DNA (4236bp) protein (1412aa)
LPXTG-motif cell wall anchor domain protein n=2 Tax=Clostridiales RepID=E4LNI7_9CLOT
LPXTG cell wall anchor domain protein {ECO:0000313|EMBL:EQJ63729.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_140_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10325..10777
DNA (453bp) protein (151aa)
IS801, transposase family protein n=2 Tax=Clostridiales RepID=E4LNI8_9CLOT
Transposase family protein {ECO:0000313|EMBL:EQJ63730.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
transposase
L3_114_000M1_scaffold_140_7
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

10894..11067
DNA (174bp) protein (58aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LNI9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC81855.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_000M1_scaffold_140_8
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11904..12395
DNA (492bp) protein (164aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1AW23_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ63733.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_140_9
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12545..13426
DNA (882bp) protein (294aa)
AP endonuclease, family 2 n=1 Tax=Clostridium sp. HGF2 RepID=E4LNJ2_9CLOT
AP endonuclease, family 2 {ECO:0000313|EMBL:EFR39603.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
sugar phosphate isomerase/epimerase
L3_114_000M1_scaffold_140_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13457..16249
DNA (2793bp) protein (931aa)
Sigma-54 interaction domain protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LNJ3_9CLOT
Sigma-54 interaction domain protein {ECO:0000313|EMBL:EFR39579.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
sigma-54 factor interaction domain-containing protein
L3_114_000M1_scaffold_140_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

16359..16796
DNA (438bp) protein (146aa)
PTS system, mannose/fructose/sorbose family, IIA component n=4 Tax=Firmicutes RepID=H1AW26_9FIRM
PTS system mannose/fructose/sorbose family IIA component {ECO:0000313|EMBL:CDC81847.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
PTS system, IIa component
L3_114_000M1_scaffold_140_12
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16786..17268
DNA (483bp) protein (161aa)
Fructose-specific phosphotransferase enzyme IIB component n=4 Tax=Firmicutes RepID=E4LNJ6_9CLOT
PTS system sorbose subIIB component family protein {ECO:0000313|EMBL:EQJ63737.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS sugar transporter
L3_114_000M1_scaffold_140_13
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17285..18061
DNA (777bp) protein (259aa)
PTS system sorbose-specific iic component n=1 Tax=Clostridium sp. HGF2 RepID=E4LNJ7_9CLOT
PTS system sorbose-specific iic component {ECO:0000313|EMBL:EFR39635.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PTS sorbose-specific transporter subunit IIC
L3_114_000M1_scaffold_140_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18058..18876
DNA (819bp) protein (273aa)
PTS system mannose/fructose/sorbose family IID component n=3 Tax=Firmicutes RepID=E4LNJ8_9CLOT
PTS system mannose/fructose/sorbose IID component family protein {ECO:0000313|EMBL:EQJ63739.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PTS system mannose/fructose/sorbose family transporter subunit IID
L3_114_000M1_scaffold_140_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19224..20906)
DNA (1683bp) protein (561aa)
Diguanylate cyclase (GGDEF) domain protein n=4 Tax=Firmicutes RepID=E4LNJ9_9CLOT
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ63740.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_140_16
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21152..21949)
DNA (798bp) protein (266aa)
Phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EFR39527.1}; EC=2.7.4.7 {ECO:0000313|EMBL:EFR39527.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
phosphomethylpyrimidine kinase (EC:2.7.4.7)
Phosphomethylpyrimidine kinase n=1 Tax=Clostridium sp. HGF2 RepID=E4LNK0_9CLOT
L3_114_000M1_scaffold_140_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21952..22590)
DNA (639bp) protein (213aa)
HAD hydrolase, family IA, variant 3 n=4 Tax=Firmicutes RepID=E4LNK1_9CLOT
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFR39583.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E
L3_114_000M1_scaffold_140_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22980..24479
DNA (1500bp) protein (500aa)
ypwA; Putative metalloprotease YpwA (EC:3.4.24.-)
Carboxypeptidase Taq (M32) metallopeptidase n=3 Tax=Firmicutes RepID=E4LNK2_9CLOT
Carboxypeptidase Taq (M32) metallopeptidase family protein {ECO:0000313|EMBL:EQJ63743.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_140_19
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(24856..26280)
DNA (1425bp) protein (475aa)
Uncharacterized protein n=3 Tax=Erysipelotrichaceae RepID=H1AW34_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO29623.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
glycoside hydrolase
L3_114_000M1_scaffold_140_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26359..27027)
DNA (669bp) protein (223aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LNK5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ63745.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_140_21
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27024..27836)
DNA (813bp) protein (271aa)
Cof-like hydrolase n=3 Tax=Firmicutes RepID=E4LNK6_9CLOT
Cof-like hydrolase {ECO:0000313|EMBL:EFR39592.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Predicted hydrolases of the HAD superfamily
L3_114_000M1_scaffold_140_22
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27867..29240)
DNA (1374bp) protein (458aa)
Peptidase, M24 family {ECO:0000313|EMBL:EFR39640.1}; EC=3.4.-.- {ECO:0000313|EMBL:EFR39640.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Peptidase, M24 family n=1 Tax=Clostridium sp. HGF2 RepID=E4LNK7_9CLOT
hypothetical protein
L3_114_000M1_scaffold_140_23
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29297..30739)
DNA (1443bp) protein (481aa)
MlrC domain protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LNK8_9CLOT
MlrC domain protein {ECO:0000313|EMBL:EFR39516.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
microcystin LR degradation protein MlrC-like protein
L3_114_000M1_scaffold_140_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30787..32226)
DNA (1440bp) protein (480aa)
MlrC domain protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LNK9_9CLOT
MlrC domain protein {ECO:0000313|EMBL:EFR39572.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
microcystin LR degradation protein MlrC-like protein
L3_114_000M1_scaffold_140_25
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32317..33702)
DNA (1386bp) protein (462aa)
Protein-N(pi)-phosphohistidine--sugar phosphotransferase (EC:2.7.1.69)
Phosphotransferase system, EIIC n=3 Tax=Firmicutes RepID=E4LNL0_9CLOT
Phosphotransferase system, EIIC {ECO:0000313|EMBL:EFR39625.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_140_26
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34042..34881)
DNA (840bp) protein (280aa)
Transcription antiterminator LicT n=2 Tax=Firmicutes RepID=E4LNL1_9CLOT
Transcription antiterminator LicT {ECO:0000313|EMBL:EFR39627.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
licT; BigG family transcription antiterminator
L3_114_000M1_scaffold_140_27
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(34894..35334)
DNA (441bp) protein (147aa)
PTS system, glucose subfamily, IIA component n=7 Tax=Firmicutes RepID=E4LNL2_9CLOT
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:ENY86345.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
PTS system glucose-specific transporter subunit IIABC
L3_114_000M1_scaffold_140_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36030..36947
DNA (918bp) protein (306aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LNL4_9CLOT
Tocopherol cyclase family protein {ECO:0000313|EMBL:EQJ63755.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_140_29
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37065..37952)
DNA (888bp) protein (296aa)
PHP domain protein {ECO:0000313|EMBL:EFR39610.1}; EC=3.1.3.- {ECO:0000313|EMBL:EFR39610.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
PHP domain protein n=2 Tax=Clostridiales RepID=E4LNL5_9CLOT
putative metal-dependent phosphoesterase
L3_114_000M1_scaffold_140_30
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(37949..38965)
DNA (1017bp) protein (339aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LNL6_9CLOT
ROK family protein {ECO:0000313|EMBL:EQJ63757.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
transcriptional regulator/sugar kinase
Displaying items 1-30 of 49 in total

View Taxonomy