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L3_114_000M1_scaffold_187

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Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_187_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(868..1578)
DNA (711bp) protein (237aa)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; EC=2.7.7.60 {ECO:0000256|HAMAP-Rule:MF_00108};; 4-diphosphocytidyl-2C-methyl-D-erythritol synthase {ECO:0000256|HAMAP-Rule:MF_00108}; MEP cytidylyltransferase {ECO:0000256|HAMAP-Rule:MF_00108}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase (EC:2.7.7.60)
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CS43_9FIRM
L3_114_000M1_scaffold_187_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(1580..2608)
DNA (1029bp) protein (343aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6C1_9FIRM
L3_114_000M1_scaffold_187_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2622..3530)
DNA (909bp) protein (303aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {ECO:0000256|HAMAP-Rule:MF_01818}; tRNase Z {ECO:0000256|HAMAP-Rule:MF_01818}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
RNAse Z (EC:3.1.26.11)
Ribonuclease Z n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5K5_9FIRM
L3_114_000M1_scaffold_187_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3546..3779)
DNA (234bp) protein (78aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CS46_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31872.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_187_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3867..5045)
DNA (1179bp) protein (393aa)
Ribosomal-protein-alanine acetyltransferase {ECO:0000313|EMBL:EDY31873.1}; EC=2.3.1.128 {ECO:0000313|EMBL:EDY31873.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Ribosomal-protein-alanine acetyltransferase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS47_9FIRM
glycoprotease
L3_114_000M1_scaffold_187_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5068..5493)
DNA (426bp) protein (142aa)
Hydrolase, P-loop family n=2 Tax=Ruminococcus lactaris RepID=B5CS48_9FIRM
Hydrolase, P-loop family {ECO:0000313|EMBL:EDY31874.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
conserved hypothetical nucleotide-binding protein
L3_114_000M1_scaffold_187_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5539..6717)
DNA (1179bp) protein (393aa)
AICAR transformylase/IMP cyclohydrolase PurH (only IMP cyclohydrolase domain in Aful) (EC:2.1.2.3 3.5.4.10)
AICARFT/IMPCHase bienzyme n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS49_9FIRM
AICARFT/IMPCHase bienzyme {ECO:0000313|EMBL:EDY31875.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_187_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6767..7483)
DNA (717bp) protein (239aa)
IMP cyclohydrolase-like protein n=2 Tax=Ruminococcus lactaris RepID=B5CS50_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22300.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
IMP cyclohydrolase-like protein.
L3_114_000M1_scaffold_187_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7557..8045)
DNA (489bp) protein (163aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4J8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22299.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
CarD-like/TRCF domain.
L3_114_000M1_scaffold_187_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8441..9997)
DNA (1557bp) protein (519aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4H3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22298.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ATPase components of ABC transporters with duplicated ATPase domains
L3_114_000M1_scaffold_187_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10031..12232)
DNA (2202bp) protein (734aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5E0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22297.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_187_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12255..15596)
DNA (3342bp) protein (1114aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6B2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22296.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_187_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15648..15860)
DNA (213bp) protein (71aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CS55_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31881.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_187_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16470..17303)
DNA (834bp) protein (278aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4J2_9FIRM
L3_114_000M1_scaffold_187_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17392..17940)
DNA (549bp) protein (183aa)
ANTAR domain protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS57_9FIRM
ANTAR domain protein {ECO:0000313|EMBL:EDY31883.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Response regulator with putative antiterminator output domain
L3_114_000M1_scaffold_187_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18032..19366)
DNA (1335bp) protein (445aa)
Glutamine synthetase, type I {ECO:0000313|EMBL:EDY31884.1}; EC=6.3.1.2 {ECO:0000313|EMBL:EDY31884.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
glutamine synthetase, type I (EC:6.3.1.2)
Glutamine synthetase, type I n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS58_9FIRM
L3_114_000M1_scaffold_187_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19551..20498)
DNA (948bp) protein (316aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CS60_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY31886.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Putative GTPases (G3E family)
L3_114_000M1_scaffold_187_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20529..21695)
DNA (1167bp) protein (389aa)
CobW/P47K family protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS61_9FIRM
CobW/P47K family protein {ECO:0000313|EMBL:EDY31887.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Putative GTPases (G3E family)
L3_114_000M1_scaffold_187_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21791..22543)
DNA (753bp) protein (251aa)
Exodeoxyribonuclease III {ECO:0000313|EMBL:EDY31888.1}; EC=3.1.11.2 {ECO:0000313|EMBL:EDY31888.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Exodeoxyribonuclease III n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS62_9FIRM
hypothetical protein
L3_114_000M1_scaffold_187_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22545..23303)
DNA (759bp) protein (253aa)
tRNA pseudouridine synthase A {ECO:0000256|HAMAP-Rule:MF_00171}; EC=5.4.99.12 {ECO:0000256|HAMAP-Rule:MF_00171};; tRNA pseudouridine(38-40) synthase {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA pseudouridylate synthase I {ECO:0000256|HAMAP-Rule:MF_00171}; tRNA-uridine isomerase I {ECO:0000256|HAMAP-Rule:MF_00171}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
pseudouridylate synthase I (EC:5.4.99.12)
tRNA pseudouridine synthase A n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CS63_9FIRM
L3_114_000M1_scaffold_187_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23835..25121)
DNA (1287bp) protein (429aa)
Transposase, IS116/IS110/IS902 family n=3 Tax=Ruminococcus lactaris RepID=B5CMM6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17842.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
transposase
L3_114_000M1_scaffold_187_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25314..25763)
DNA (450bp) protein (150aa)
Transcriptional repressor NrdR n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5C8_9FIRM
Transcriptional repressor NrdR {ECO:0000256|HAMAP-Rule:MF_00440, ECO:0000256|SAAS:SAAS00087559}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
transcriptional regulator NrdR
L3_114_000M1_scaffold_187_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25873..26127)
DNA (255bp) protein (85aa)
Sporulation protein, YlmC/YmxH family n=2 Tax=Ruminococcus lactaris RepID=B5CS66_9FIRM
Sporulation protein, YlmC/YmxH family {ECO:0000313|EMBL:EDY31892.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
sporulation protein, YlmC/YmxH family
L3_114_000M1_scaffold_187_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26460..26834
DNA (375bp) protein (125aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CL36_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33982.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_187_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26901..28490
DNA (1590bp) protein (530aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CL37_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY33983.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Predicted integral membrane protein
L3_114_000M1_scaffold_187_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28572..29501
DNA (930bp) protein (310aa)
Carbamate kinase (EC:2.7.2.2)
Carbamate kinase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4F8_9FIRM
Carbamate kinase {ECO:0000256|PIRNR:PIRNR000723}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_187_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29682..30341
DNA (660bp) protein (220aa)
Channel protein, hemolysin III family n=2 Tax=Ruminococcus lactaris RepID=B5CL39_9FIRM
Channel protein, hemolysin III family {ECO:0000313|EMBL:EDY33985.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
channel protein, hemolysin III family
L3_114_000M1_scaffold_187_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30510..32048)
DNA (1539bp) protein (513aa)
Asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthase (Glutamine-hydrolyzing) n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C699_9FIRM
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:ETD22281.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_187_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32141..33124)
DNA (984bp) protein (328aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5H8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22280.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_187_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33093..34040)
DNA (948bp) protein (316aa)
CobW/P47K family protein n=2 Tax=Ruminococcus lactaris RepID=B5CL42_9FIRM
CobW/P47K family protein {ECO:0000313|EMBL:EDY33988.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Putative GTPases (G3E family)
Displaying items 1-30 of 48 in total

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