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L3_114_000M1_scaffold_188

Search features with annotation key words

Displaying items 1-30 of 45 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_188_1
unknown

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comp(341..484)
DNA (144bp) protein (48aa)

This feature has no annotations

L3_114_000M1_scaffold_188_2
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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772..1044
DNA (273bp) protein (91aa)
10 kDa chaperonin n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7W6_9FIRM
groES; Co-chaperonin GroES
10 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00580, ECO:0000256|RuleBase:RU000535}; GroES protein {ECO:0000256|HAMAP-Rule:MF_00580}; Protein Cpn10 {ECO:0000256|HAMAP-Rule:MF_00580}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1088..2731
DNA (1644bp) protein (548aa)
60 kDa chaperonin n=1 Tax=Ruminococcus albus 8 RepID=E9SGQ5_RUMAL
groEL; Chaperonin GroEL
60 kDa chaperonin {ECO:0000256|HAMAP-Rule:MF_00600, ECO:0000256|RuleBase:RU000419}; GroEL protein {ECO:0000256|HAMAP-Rule:MF_00600}; Protein Cpn60 {ECO:0000256|HAMAP-Rule:MF_00600}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3113..3817
DNA (705bp) protein (235aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG94_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO03828.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3810..5231
DNA (1422bp) protein (474aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCO03829.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TB02_9FIRM
L3_114_000M1_scaffold_188_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5241..6551
DNA (1311bp) protein (437aa)
Peptidase S1 and S6 chymotrypsin/Hap n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0B1_9FIRM
Peptidase S1 and S6 chymotrypsin/Hap {ECO:0000313|EMBL:CDC66883.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative serine protease
L3_114_000M1_scaffold_188_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6811..7626)
DNA (816bp) protein (272aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7W0_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03831.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7914..8360
DNA (447bp) protein (149aa)
Stage V sporulation protein AC n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG87_9FIRM
Stage V sporulation protein AC {ECO:0000313|EMBL:CDC66881.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Stage V sporulation protein AC
L3_114_000M1_scaffold_188_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8712..9227)
DNA (516bp) protein (172aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3U6_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03833.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9395..10747)
DNA (1353bp) protein (451aa)
MATE efflux family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAZ8_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDC66879.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
multidrug resistance protein, MATE family, drug/sodium antiporter
L3_114_000M1_scaffold_188_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10964..13423)
DNA (2460bp) protein (820aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T0A3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66878.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative membrane protein
L3_114_000M1_scaffold_188_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13423..13956)
DNA (534bp) protein (178aa)
Sigma-70 region 2 n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7V4_9FIRM
sig3; RNA polymerase sigma factor, sigma-70 family
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:CCO03836.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14161..15648)
DNA (1488bp) protein (496aa)
Membrane-flanked domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG82_9FIRM
Membrane-flanked domain {ECO:0000313|EMBL:CDC66876.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
putative membrane protein
L3_114_000M1_scaffold_188_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15673..16128)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3U0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66875.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_114_000M1_scaffold_188_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16271..17563
DNA (1293bp) protein (431aa)
Amino acid carrier protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAZ3_9FIRM
Na+ and/or H+ alanine and/or glycine symporter
Na+ and/or H+ alanine and/or glycine symporter {ECO:0000313|EMBL:CCO03839.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17987..18829)
DNA (843bp) protein (281aa)
fumA; Putative fumarate hydratase subunit alpha (EC:4.2.1.2)
Putative fumarate hydratase subunit alpha {ECO:0000313|EMBL:CCO03840.1}; EC=4.2.1.2 {ECO:0000313|EMBL:CCO03840.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Hydro-lyase Fe-S type tartrate/fumarate subfamily alpha subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T097_9FIRM
L3_114_000M1_scaffold_188_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18832..19296)
DNA (465bp) protein (155aa)
CheW protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7U7_9FIRM
cheW1; Chemotaxis protein cheW
Chemotaxis protein cheW {ECO:0000313|EMBL:CCO03841.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19322..20311)
DNA (990bp) protein (330aa)
Protein-glutamate methylesterase {ECO:0000256|SAAS:SAAS00070601}; EC=3.1.1.61 {ECO:0000256|SAAS:SAAS00070601};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
cheB; Two-component system, chemotaxis family, response regulator CheB (EC:3.1.1.61)
CheB methylesterase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG77_9FIRM
L3_114_000M1_scaffold_188_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20308..21144)
DNA (837bp) protein (279aa)
cheR; Chemotaxis protein methyltransferase CheR (EC:2.1.1.80)
Methyltransferase CheR SAM binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3T5_9FIRM
Methyltransferase CheR SAM binding domain protein {ECO:0000313|EMBL:CDC66870.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_188_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21170..21613)
DNA (444bp) protein (148aa)
Chemotaxis protein CheW family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY8_9FIRM
cheW2; Chemotaxis protein CheW
Chemotaxis protein CheW {ECO:0000313|EMBL:CCO03844.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21616..23694)
DNA (2079bp) protein (693aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121, ECO:0000313|EMBL:CCO03845.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
cheA; Two-component system, chemotaxis family, sensor kinase CheA (EC:2.7.13.3)
Putative chemotaxis protein CheA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T091_9FIRM
L3_114_000M1_scaffold_188_22
unknown

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comp(23786..24247)
DNA (462bp) protein (154aa)

This feature has no annotations

L3_114_000M1_scaffold_188_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24489..25637)
DNA (1149bp) protein (383aa)
Putative amidohydrolase (EC:3.5.2.-)
Amidohydrolase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG72_9FIRM
Amidohydrolase {ECO:0000313|EMBL:CDC66866.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_188_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25656..26096)
DNA (441bp) protein (147aa)
dut; dUTP pyrophosphatase (EC:3.6.1.23)
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|SAAS:SAAS00071038}; EC=3.6.1.23 {ECO:0000256|SAAS:SAAS00071036, ECO:0000313|EMBL:CCO03847.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
DUTP diphosphatase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3T2_9FIRM
L3_114_000M1_scaffold_188_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26098..28170)
DNA (2073bp) protein (691aa)
Putative protease (EC:3.4.-.-)
Peptidase U32 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY4_9FIRM
Peptidase U32 family {ECO:0000313|EMBL:CDC66864.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_188_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28170..28676)
DNA (507bp) protein (169aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T086_9FIRM
conserved hypothetical protein
Cell division protein ZapA {ECO:0000256|SAAS:SAAS00072473}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_188_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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28881..29315
DNA (435bp) protein (145aa)
Transcriptional regulator BadM/Rrf2 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U7T3_9FIRM
Transcriptional regulator BadM/Rrf2 family {ECO:0000313|EMBL:CDC66862.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Putative transcriptional regulator (rrf2 family)
L3_114_000M1_scaffold_188_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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29710..30261
DNA (552bp) protein (184aa)
TIGR04002 family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TG67_9FIRM
Putative membrane protein
TIGR04002 family protein {ECO:0000313|EMBL:CDC66861.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_188_29
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30395..31024)
DNA (630bp) protein (210aa)
Putative orotate phosphoribosyltransferase (EC:2.4.2.10)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T3S8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC66860.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_188_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31361..31636
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAY0_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03853.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 45 in total

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