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L3_114_000M1_scaffold_189

Search features with annotation key words

Displaying items 1-30 of 49 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_189_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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218..943
DNA (726bp) protein (242aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8V3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67232.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Two-component system transcriptional regulator
L3_114_000M1_scaffold_189_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

943..2268
DNA (1326bp) protein (442aa)
Putative two-component system sensor histidine kinase (EC:2.7.13.3)
Histidine kinase-DNA gyrase B-and HSP90-like ATPase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH64_9FIRM
Histidine kinase-DNA gyrase B-and HSP90-like ATPase {ECO:0000313|EMBL:CDC67231.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_189_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2391..2987
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4U8_9FIRM
Putative agrB-like protein
Putative agrB-like protein {ECO:0000313|EMBL:CCO03881.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2974..3108
DNA (135bp) protein (45aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC21_9FIRM
secreted hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDF44008.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_5
unknown

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3513..4688
DNA (1176bp) protein (392aa)

This feature has no annotations

L3_114_000M1_scaffold_189_6
Butyrivibrio crossotus, Butyrivibrio, Clostridiales, Clostridia, Firmicutes, Bacteria

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4869..7229
DNA (2361bp) protein (787aa)
Uncharacterized protein n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=D4RXD8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFF69300.1}; TaxID=511680 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Butyrivibrio.;" source="Butyrivibrio crossotus DSM 2876.;"
L3_114_000M1_scaffold_189_7
Firmicutes bacterium CAG:272, Firmicutes, Bacteria

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7233..7628
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:272 RepID=R6TYX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC73091.1}; TaxID=1263015 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:272.;"
L3_114_000M1_scaffold_189_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7751..8134)
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6PTF0_9CLOT
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03897.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8316..8945)
DNA (630bp) protein (210aa)
Transcriptional regulator LuxR family n=1 Tax=Clostridium sp. CAG:413 RepID=R6NLM1_9CLOT
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO03898.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_10
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8942..10192)
DNA (1251bp) protein (417aa)
Two-component system sensor histidine kinase (EC:2.7.13.3)
Two-component system sensor histidine kinase {ECO:0000313|EMBL:CCO03899.1}; EC=2.7.13.3 {ECO:0000313|EMBL:CCO03899.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:413 RepID=R6NXD0_9CLOT
L3_114_000M1_scaffold_189_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(10189..11874)
DNA (1686bp) protein (562aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH59_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67226.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_114_000M1_scaffold_189_12
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12272..14158)
DNA (1887bp) protein (629aa)
Diguanylate cyclase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4U4_9FIRM
Diguanylate cyclase with N-terminal HTH-type transcriptional regulator domain {ECO:0000313|EMBL:CCO03901.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
diguanylate cyclase with N-terminal HTH-type transcriptional regulator domain
L3_114_000M1_scaffold_189_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14477..15406)
DNA (930bp) protein (310aa)
BAAT/acyl-CoA thioester hydrolase C-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC16_9FIRM
BAAT/acyl-CoA thioester hydrolase C-terminal domain protein {ECO:0000313|EMBL:CDC67224.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
acyl-CoA thioester hydrolase family protein
L3_114_000M1_scaffold_189_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15785..17791)
DNA (2007bp) protein (669aa)
Ferrous iron transport protein B n=1 Tax=Ruminococcus sp. CAG:579 RepID=R6CEC3_9FIRM
Ferrous iron transport protein B {ECO:0000313|EMBL:CCO03904.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
feoB1; Ferrous iron transport protein B
L3_114_000M1_scaffold_189_15
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17788..18030)
DNA (243bp) protein (81aa)
Ferrous iron transporter FeoB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH53_9FIRM
feoA1; Ferrous iron transport protein A
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CDC67221.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_189_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18268..18513
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4U1_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO03906.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_17
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18749..19972
DNA (1224bp) protein (408aa)
Iron-only hydrogenase maturation protein HydF n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC11_9FIRM
Iron-only hydrogenase maturation protein HydF {ECO:0000313|EMBL:CDC67219.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Small GTP-binding protein
L3_114_000M1_scaffold_189_18
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19950..20990
DNA (1041bp) protein (347aa)
Radical SAM domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T178_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:CDC67218.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
conserved hypothetical protein
L3_114_000M1_scaffold_189_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20990..21754
DNA (765bp) protein (255aa)
nifH1; Nitrogenase iron protein (EC:1.18.6.1)
Nitrogenase iron protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8U2_9FIRM
Nitrogenase iron protein {ECO:0000313|EMBL:CDC67217.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_189_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21751..23043
DNA (1293bp) protein (431aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH49_9FIRM
Putative nitrogenase component I, alpha chain
Putative nitrogenase component I, alpha chain {ECO:0000313|EMBL:CCO03910.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_21
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23040..24158
DNA (1119bp) protein (373aa)
Nitrogenase molybdenum-iron protein, alpha and beta chains (EC:1.18.6.1)
Nitrogenase molybdenum-iron protein, alpha and beta chains {ECO:0000313|EMBL:CCO03911.1}; EC=1.18.6.1 {ECO:0000313|EMBL:CCO03911.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4T6_9FIRM
L3_114_000M1_scaffold_189_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24192..24953
DNA (762bp) protein (254aa)
nifH2; Nitrogenase iron protein (EC:1.18.6.1)
Mo-nitrogenase iron protein subunit NifH n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TC07_9FIRM
Mo-nitrogenase iron protein subunit NifH {ECO:0000313|EMBL:CDC67214.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_189_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24946..26247
DNA (1302bp) protein (434aa)
nifE; Nitrogenase molybdenum-iron protein alpha and beta chains-like protein (EC:1.18.6.1)
Nitrogenase molybdenum-iron protein alpha and beta chains-like protein {ECO:0000313|EMBL:CCO03913.1}; EC=1.18.6.1 {ECO:0000313|EMBL:CCO03913.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Oxidoreductase/nitrogenase component 1 n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UG72_RUMA7
L3_114_000M1_scaffold_189_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26244..27311
DNA (1068bp) protein (356aa)
putative Nitrogenase component (EC:1.18.-.-)
Putative Nitrogenase component {ECO:0000313|EMBL:CCO03914.1}; EC=1.18.-.- {ECO:0000313|EMBL:CCO03914.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T171_9FIRM
L3_114_000M1_scaffold_189_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27308..27709
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8T4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO03915.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_26
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27709..29988
DNA (2280bp) protein (760aa)
hypF; Carbamoyltransferase/(NiFe) hydrogenase maturation protein HypF (EC:2.1.3.-)
(NiFe) hydrogenase maturation protein HypF n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH40_9FIRM
(NiFe) hydrogenase maturation protein HypF {ECO:0000313|EMBL:CDC67206.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_189_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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30283..30492
DNA (210bp) protein (70aa)
Hydrogenase assembly chaperone HypC/HupF n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4S8_9FIRM
hupN; Hydrogenase assembly chaperone HypC/HupF
Hydrogenase assembly chaperone HypC/HupF {ECO:0000313|EMBL:CCO03917.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30489..31541
DNA (1053bp) protein (351aa)
Hydrogenase expression/formation protein HypD n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBZ8_9FIRM
Hydrogenase expression/formation protein HypD {ECO:0000313|EMBL:CDC67204.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypD; Hydrogenase expression/formation protein HypD
L3_114_000M1_scaffold_189_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31570..32577
DNA (1008bp) protein (336aa)
Predicted hydrogenase expression/formation protein HypE n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T167_9FIRM
hupE; Hydrogenase expression/formation protein HupE
Hydrogenase expression/formation protein HupE {ECO:0000313|EMBL:CCO03919.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_189_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32813..34072)
DNA (1260bp) protein (420aa)
Glutamate-1-semialdehyde 2,1-aminomutase {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818}; Short=GSA {ECO:0000256|HAMAP-Rule:MF_00375};; EC=5.4.3.8 {ECO:0000256|HAMAP-Rule:MF_00375, ECO:0000256|SAAS:SAAS00088818};; Glutamate-1-semialdehyde aminotransferase {ECO:0000256|HAMAP-Rule:MF_00375}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hemL; Glutamate-1-semialdehyde 2,1-aminomutase (EC:5.4.3.8)
Glutamate-1-semialdehyde 2,1-aminomutase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8T0_9FIRM
Displaying items 1-30 of 49 in total

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