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L3_114_000M1_scaffold_261

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Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_261_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

351..2627
DNA (2277bp) protein (759aa)
Protein serine/threonine phosphatase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCI1_9FIRM
Protein serine/threonine phosphatase {ECO:0000313|EMBL:CDC65536.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_261_2
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2871..4898
DNA (2028bp) protein (676aa)
1,4-alpha-glucan branching enzyme GlgB {ECO:0000256|HAMAP-Rule:MF_00685}; EC=2.4.1.18 {ECO:0000256|HAMAP-Rule:MF_00685};; 1,4-alpha-D-glucan:1,4-alpha-D-glucan 6-glucosyl-transferase {ECO:0000256|HAMAP-Rule:MF_00685}; Alpha-(1->4)-glucan branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; Glycogen branching enzyme {ECO:0000256|HAMAP-Rule:MF_00685}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
glgB1; 1,4-alpha-glucan branching enzyme (Carbohydrate-Binding Module Family 48 protein / Glycoside Hydrolase Family 13 protein ) (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme GlgB n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZZ4_9FIRM
L3_114_000M1_scaffold_261_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4934..6136
DNA (1203bp) protein (401aa)
glgC; glucose-1-phosphate adenylyltransferase, GlgC subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565}; EC=2.7.7.27 {ECO:0000256|HAMAP-Rule:MF_00624, ECO:0000256|RuleBase:RU003565};; ADP-glucose pyrophosphorylase {ECO:0000256|HAMAP-Rule:MF_00624}; ADP-glucose synthase {ECO:0000256|HAMAP-Rule:MF_00624}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Glucose-1-phosphate adenylyltransferase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T732_9FIRM
L3_114_000M1_scaffold_261_4
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6154..7281
DNA (1128bp) protein (376aa)
glgD; Glucose-1-phosphate adenylyltransferase, GlgD subunit (EC:2.7.7.27)
Glucose-1-phosphate adenylyltransferase GlgD subunit n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U437_9FIRM
Glucose-1-phosphate adenylyltransferase GlgD subunit {ECO:0000313|EMBL:CDC65532.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_261_5
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7317..8729
DNA (1413bp) protein (471aa)
Glycogen synthase {ECO:0000256|HAMAP-Rule:MF_00484}; EC=2.4.1.21 {ECO:0000256|HAMAP-Rule:MF_00484};; Starch [bacterial glycogen] synthase {ECO:0000256|HAMAP-Rule:MF_00484}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
glgA2; glycogen synthase (Glycosyltransferase Family 5 protein ) (EC:2.4.1.21)
Glycogen synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCH8_9FIRM
L3_114_000M1_scaffold_261_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8890..9420)
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SZZ1_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDC65530.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_261_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9653..10549)
DNA (897bp) protein (299aa)
Radical SAM domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T729_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05866.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_8
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10546..11640)
DNA (1095bp) protein (365aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SWK3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05867.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11654..12535)
DNA (882bp) protein (294aa)
ispE; 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase (EC:2.7.1.148)
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090350}; Short=CMK {ECO:0000256|HAMAP-Rule:MF_00061};; EC=2.7.1.148 {ECO:0000256|HAMAP-Rule:MF_00061, ECO:0000256|SAAS:SAAS00090262};; 4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol kinase {ECO:0000256|HAMAP-Rule:MF_00061}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
4-diphosphocytidyl-2-C-methyl-D-erythritol kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U432_9FIRM
L3_114_000M1_scaffold_261_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12519..13703)
DNA (1185bp) protein (395aa)
aminotransferase class I and II (EC:2.6.1.-)
Putative aspartate transaminase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TCH5_9FIRM
Putative aspartate transaminase {ECO:0000313|EMBL:CDC65526.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_261_11
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13700..14179)
DNA (480bp) protein (160aa)
Transcriptional regulator AsnC family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T724_9FIRM
Transcriptional regulator, AsnC family
Transcriptional regulator, AsnC family {ECO:0000313|EMBL:CCO05870.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14592..16832
DNA (2241bp) protein (747aa)
Cell wall binding repeat-containing protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH19_9FIRM
Cell wall binding repeat-containing protein {ECO:0000313|EMBL:CDC67181.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_261_13
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16883..17356)
DNA (474bp) protein (158aa)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395}; Short=MECDP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPP-synthase {ECO:0000256|HAMAP-Rule:MF_00107};; Short=MECPS {ECO:0000256|HAMAP-Rule:MF_00107};; EC=4.6.1.12 {ECO:0000256|HAMAP-Rule:MF_00107, ECO:0000256|RuleBase:RU004395};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
ispF; 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase (EC:4.6.1.12)
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Q6_9FIRM
L3_114_000M1_scaffold_261_14
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17388..18500)
DNA (1113bp) protein (371aa)
pheA; P-protein (Prephenate dehydratase/chorismate mutase) (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBX2_9FIRM
Prephenate dehydratase {ECO:0000313|EMBL:CDC67179.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_261_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18553..19140)
DNA (588bp) protein (196aa)
putative phosphinothricin acetyltransferase (EC:2.3.1.183)
Putative phosphinothricin acetyltransferase {ECO:0000313|EMBL:CCO05874.1}; EC=2.3.1.183 {ECO:0000313|EMBL:CCO05874.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Acetyltransferase GNAT family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T145_9FIRM
L3_114_000M1_scaffold_261_16
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19151..19564)
DNA (414bp) protein (138aa)
Putative membrane protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05875.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19686..20840)
DNA (1155bp) protein (385aa)
Cysteine desulfurase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH14_9FIRM
cysteine desulfurase family protein
Cysteine desulfurase family protein {ECO:0000313|EMBL:CCO05876.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20837..21061)
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4Q2_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO05877.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_19
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21253..21657
DNA (405bp) protein (135aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBW7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67174.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_261_20
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21808..22455
DNA (648bp) protein (216aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T142_9FIRM
conserved hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05879.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22695..23957
DNA (1263bp) protein (421aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67172.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_114_000M1_scaffold_261_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24082..24411
DNA (330bp) protein (110aa)
Cupin domain n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH12_9FIRM
Cupin domain {ECO:0000313|EMBL:CDC67171.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_261_23
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24386..25372)
DNA (987bp) protein (329aa)
SpoIID/LytB domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4P8_9FIRM
spoIID; Stage II sporulation protein D
Stage II sporulation protein D {ECO:0000313|EMBL:CCO05882.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25585..26931
DNA (1347bp) protein (449aa)
Citrate synthase (EC:2.3.3.1)
Citrate (Si)-synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBW2_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369, ECO:0000313|EMBL:CCO05883.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_25
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27057..28391
DNA (1335bp) protein (445aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T137_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO05884.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28413..29117
DNA (705bp) protein (235aa)
Two component transcriptional regulator winged helix family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U8Q0_9FIRM
Two-component system transcriptional regulator
Two-component system transcriptional regulator {ECO:0000313|EMBL:CCO05885.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_261_27
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29152..30657
DNA (1506bp) protein (502aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Two-component system sensor histidine kinase (EC:2.7.3.-)
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TH08_9FIRM
L3_114_000M1_scaffold_261_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30687..31649
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T4P3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC67165.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_261_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

31643..32464
DNA (822bp) protein (274aa)
hemK; M|ethyltransferase, HemK family (EC:2.1.1.-)
M|ethyltransferase, HemK family {ECO:0000313|EMBL:CCO05888.1}; EC=2.1.1.- {ECO:0000313|EMBL:CCO05888.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Protein-(Glutamine-N5) methyltransferase release factor-specific n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TBV7_9FIRM
L3_114_000M1_scaffold_261_30
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


32579..33829
DNA (1251bp) protein (417aa)
recA; Recombination protein RecA (EC:3.6.3.8)
Protein RecA n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T134_9FIRM
Protein RecA {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; Recombinase A {ECO:0000256|HAMAP-Rule:MF_00268, ECO:0000256|RuleBase:RU000526}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Displaying items 1-30 of 39 in total

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