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L3_114_000M1_scaffold_272

Search features with annotation key words

Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_272_1
Blautia obeum, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..226
DNA (225bp) protein (75aa)
50S ribosomal protein L31 n=4 Tax=Clostridiales RepID=D4LKC5_9FIRM
LSU ribosomal protein L31P
50S ribosomal protein L31 {ECO:0000256|HAMAP-Rule:MF_00501, ECO:0000256|SAAS:SAAS00004482}; TaxID=411459 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Blautia obeum ATCC 29174.;"
L3_114_000M1_scaffold_272_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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321..1319
DNA (999bp) protein (333aa)
Predicted metal-dependent enzyme n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N465_9FIRM
Predicted metal-dependent enzyme {ECO:0000313|EMBL:CCY98800.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted metal-dependent enzyme
L3_114_000M1_scaffold_272_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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1306..2181
DNA (876bp) protein (292aa)
Release factor glutamine methyltransferase {ECO:0000256|HAMAP-Rule:MF_02126}; Short=RF MTase {ECO:0000256|HAMAP-Rule:MF_02126};; EC=2.1.1.297 {ECO:0000256|HAMAP-Rule:MF_02126};; N5-glutamine methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-(glutamine-N5) MTase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; Protein-glutamine N-methyltransferase PrmC {ECO:0000256|HAMAP-Rule:MF_02126}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Release factor glutamine methyltransferase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NN56_9FIRM
protein-(glutamine-N5) methyltransferase, release factor-specific
L3_114_000M1_scaffold_272_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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2221..3297
DNA (1077bp) protein (359aa)
Peptide chain release factor 1 n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NPC7_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
bacterial peptide chain release factor 1 (bRF-1)
L3_114_000M1_scaffold_272_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3355..4272
DNA (918bp) protein (306aa)
UDP-glucose pyrophosphorylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4V3_9FIRM
UDP-glucose pyrophosphorylase {ECO:0000313|EMBL:CCY98803.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
UDP-glucose pyrophosphorylase
L3_114_000M1_scaffold_272_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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4287..5633
DNA (1347bp) protein (449aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|RuleBase:RU004327};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NA89_9FIRM
L3_114_000M1_scaffold_272_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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5642..6700
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N468_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY98805.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_272_8
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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6702..7937
DNA (1236bp) protein (412aa)
GTPase HflX n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NN62_9FIRM
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
GTP-binding protein HflX
L3_114_000M1_scaffold_272_9
Ruminococcus sp. CAG:90, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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8154..10526
DNA (2373bp) protein (791aa)
anaerobic ribonucleoside-triphosphate reductase (EC:1.17.4.2)
Anaerobic ribonucleoside-triphosphate reductase n=1 Tax=Ruminococcus sp. CAG:90 RepID=R7GQI9_9FIRM
Anaerobic ribonucleoside-triphosphate reductase {ECO:0000313|EMBL:CDE29360.1}; TaxID=1262968 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:90.;"
L3_114_000M1_scaffold_272_10
unknown

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10718..11059
DNA (342bp) protein (114aa)

This feature has no annotations

L3_114_000M1_scaffold_272_11
unknown

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11065..11544
DNA (480bp) protein (160aa)

This feature has no annotations

L3_114_000M1_scaffold_272_12
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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11585..12025
DNA (441bp) protein (147aa)
ACT domain-containing protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NI86_9FIRM
ACT domain-containing protein {ECO:0000313|EMBL:CCY96827.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ACT domain-containing protein
L3_114_000M1_scaffold_272_13
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12047..12718
DNA (672bp) protein (224aa)
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHK4_9FIRM
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain {ECO:0000313|EMBL:CCY96826.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_114_000M1_scaffold_272_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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12672..13742
DNA (1071bp) protein (357aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MYH8_9FIRM
Signal transduction histidine kinase
L3_114_000M1_scaffold_272_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14037..14804
DNA (768bp) protein (256aa)
ABC-type antimicrobial peptide transport system ATPase component n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4F3_9FIRM
ABC-type antimicrobial peptide transport system ATPase component {ECO:0000313|EMBL:CCY96824.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
ABC-type antimicrobial peptide transport system, ATPase component
L3_114_000M1_scaffold_272_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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14797..16818
DNA (2022bp) protein (674aa)
Predicted permease n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZC1_9FIRM
Predicted permease {ECO:0000313|EMBL:CCY96823.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted permease.
L3_114_000M1_scaffold_272_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17028..17747
DNA (720bp) protein (240aa)
Predicted branched-chain amino acid permease (Azaleucine resistance) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NI81_9FIRM
Predicted branched-chain amino acid permease (Azaleucine resistance) {ECO:0000313|EMBL:CCY96822.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_114_000M1_scaffold_272_18
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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17737..18051
DNA (315bp) protein (105aa)
Branched-chain amino acid transport protein (AzlD) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NHJ8_9FIRM
Branched-chain amino acid transport protein (AzlD) {ECO:0000313|EMBL:CCY96821.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Branched-chain amino acid transport protein (AzlD).
L3_114_000M1_scaffold_272_19
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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18481..19035
DNA (555bp) protein (185aa)
Transposase, IS605 family (Fragment) n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EU54_9FIRM
Transposase, IS605 family {ECO:0000313|EMBL:EEG37190.1}; Flags: Fragment;; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
transposase, IS605 OrfB family
L3_114_000M1_scaffold_272_20
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19019..19552
DNA (534bp) protein (178aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NLM1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97972.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_114_000M1_scaffold_272_21
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19602..20699
DNA (1098bp) protein (366aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NKX9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97971.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_114_000M1_scaffold_272_22
unknown

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20932..21105
DNA (174bp) protein (58aa)

This feature has no annotations

L3_114_000M1_scaffold_272_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21098..21316
DNA (219bp) protein (73aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1T6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97970.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_272_24
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21313..21804
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N7Y7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97969.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_272_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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21794..22018
DNA (225bp) protein (75aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2G9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97968.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_272_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22082..22936)
DNA (855bp) protein (285aa)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NLL4_9FIRM
L3_114_000M1_scaffold_272_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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23290..24066
DNA (777bp) protein (259aa)
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NKX3_9FIRM
Amino acid ABC transporter substrate-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CCY97966.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
amino acid ABC transporter substrate-binding protein, PAAT family (TC 3.A.1.3.-)
L3_114_000M1_scaffold_272_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24233..24922
DNA (690bp) protein (230aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N1T0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY97965.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Polar amino acid transport system permease
L3_114_000M1_scaffold_272_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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24909..25652
DNA (744bp) protein (248aa)
amino acid ABC transporter ATP-binding protein, PAAT family (TC 3.A.1.3.-) (EC:3.6.3.21)
Polar amino acid ABC transporter n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N7Y1_9FIRM
Polar amino acid ABC transporter {ECO:0000313|EMBL:CCY97964.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_114_000M1_scaffold_272_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25853..26956
DNA (1104bp) protein (368aa)
N-acetylglucosamine-6-phosphate deacetylase {ECO:0000256|PIRNR:PIRNR038994}; EC=3.5.1.25 {ECO:0000256|PIRNR:PIRNR038994};; GlcNAc 6-P deacetylase {ECO:0000256|PIRNR:PIRNR038994}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
N-acetylglucosamine 6-phosphate deacetylase (EC:3.5.1.25)
N-acetylglucosamine-6-phosphate deacetylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N2G4_9FIRM
Displaying items 1-30 of 43 in total

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