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L3_114_000M1_scaffold_300

Search features with annotation key words

Displaying items 1-30 of 40 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_300_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(1..570)
DNA (570bp) protein (190aa)
pyruvate formate-lyase activating enzyme (EC:1.97.1.4)
Glycyl-radical enzyme activating protein family n=3 Tax=Firmicutes RepID=H1B3Y3_9FIRM
Glycyl-radical enzyme activating protein family {ECO:0000313|EMBL:ENY84280.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_000M1_scaffold_300_2
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(533..2878)
DNA (2346bp) protein (782aa)
Formate C-acetyltransferase {ECO:0000313|EMBL:EFR37337.1}; EC=2.3.1.54 {ECO:0000313|EMBL:EFR37337.1};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Formate C-acetyltransferase n=1 Tax=Clostridium sp. HGF2 RepID=E4LV95_9CLOT
pyruvate formate-lyase
L3_114_000M1_scaffold_300_3
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3009..3776)
DNA (768bp) protein (256aa)
Transcriptional regulator, DeoR family n=5 Tax=Firmicutes RepID=E4LV94_9CLOT
DeoR C terminal sensor domain protein {ECO:0000313|EMBL:EQJ56193.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Transcriptional regulators of sugar metabolism
L3_114_000M1_scaffold_300_4
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(4062..4442)
DNA (381bp) protein (127aa)
dfx; desulfoferrodoxin Dfx (EC:1.15.1.2)
Uncharacterized protein n=7 Tax=Firmicutes RepID=G1VVP9_9FIRM
Desulfoferrodoxin {ECO:0000313|EMBL:ENY84277.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_000M1_scaffold_300_5
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4595..5476
DNA (882bp) protein (294aa)
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Pseudouridine synthase n=4 Tax=Firmicutes RepID=E4LV91_9CLOT
RNA pseudouridine synthase
L3_114_000M1_scaffold_300_6
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5489..6811)
DNA (1323bp) protein (441aa)
Diguanylate cyclase (GGDEF) domain protein n=3 Tax=Firmicutes RepID=E4LV90_9CLOT
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ56197.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
diguanylate cyclase
L3_114_000M1_scaffold_300_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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7113..8435
DNA (1323bp) protein (441aa)
Tagatose-6-phosphate kinase n=5 Tax=Firmicutes RepID=E4LV88_9CLOT
D-tagatose-1,6-bisphosphate aldolase subunit kbaZ {ECO:0000313|EMBL:EQJ56199.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
D-tagatose-bisphosphate aldolase class II accessory protein AgaZ
L3_114_000M1_scaffold_300_8
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(8800..10107)
DNA (1308bp) protein (436aa)
patatin family phospholipase (EC:3.1.-.-)
Uncharacterized protein n=2 Tax=Erysipelotrichaceae RepID=H1B3Z0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC83695.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_000M1_scaffold_300_9
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(10302..10739)
DNA (438bp) protein (146aa)
Transcriptional regulator, MarR family n=7 Tax=Firmicutes RepID=E4LV85_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX72073.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
Transcriptional regulator, MarR family
L3_114_000M1_scaffold_300_10
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(10753..11115)
DNA (363bp) protein (121aa)
50S ribosomal protein L20 n=7 Tax=Firmicutes RepID=E4LV84_9CLOT
50S ribosomal protein L20 {ECO:0000256|HAMAP-Rule:MF_00382, ECO:0000256|RuleBase:RU000560}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
LSU ribosomal protein L20P
L3_114_000M1_scaffold_300_11
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11133..11327)
DNA (195bp) protein (65aa)
50S ribosomal protein L35 n=7 Tax=Firmicutes RepID=E4LV83_9CLOT
50S ribosomal protein L35 {ECO:0000256|HAMAP-Rule:MF_00514, ECO:0000256|RuleBase:RU000568}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
LSU ribosomal protein L35P
L3_114_000M1_scaffold_300_12
Erysipelotrichaceae bacterium 3_1_53, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(11353..11913)
DNA (561bp) protein (187aa)
Translation initiation factor IF-3 n=8 Tax=Firmicutes RepID=E2SRY0_9FIRM
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=658659 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 3_1_53.;"
infC; translation initiation factor IF-3
L3_114_000M1_scaffold_300_13
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12092..13240)
DNA (1149bp) protein (383aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BA93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ56207.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_300_14
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13660..14010
DNA (351bp) protein (117aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LV80_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ56209.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_300_15
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14725..15081)
DNA (357bp) protein (119aa)
Sporulation initiation factor Spo0A domain protein n=5 Tax=Firmicutes RepID=E4LV79_9CLOT
Sporulation initiation factor Spo0A family protein {ECO:0000313|EMBL:EQJ56210.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
sporulation transcription factor Spo0A
L3_114_000M1_scaffold_300_16
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15676..16566)
DNA (891bp) protein (297aa)
Uncharacterized protein n=2 Tax=Firmicutes RepID=H1BA96_9FIRM
Glycosyl hydrolases 25 family protein {ECO:0000313|EMBL:EQJ56212.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
glycosyl hydrolase family 25
L3_114_000M1_scaffold_300_17
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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comp(16641..18566)
DNA (1926bp) protein (642aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BA97_9FIRM
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EHO27537.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_300_18
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18714..19217)
DNA (504bp) protein (168aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1B400_9FIRM
Acetyltransferase family protein {ECO:0000313|EMBL:EQJ56216.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Predicted acetyltransferase
L3_114_000M1_scaffold_300_19
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19899..20387)
DNA (489bp) protein (163aa)
DNA-deoxyinosine glycosylase {ECO:0000313|EMBL:EQJ56219.1}; EC=3.2.2.15 {ECO:0000313|EMBL:EQJ56219.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Uncharacterized protein n=2 Tax=Firmicutes RepID=R6UD98_9FIRM
hypothetical protein
L3_114_000M1_scaffold_300_20
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(20381..21682)
DNA (1302bp) protein (434aa)
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
rimO; 30S ribosomal protein S12 methylthiotransferase (EC:2.-.-.-)
Ribosomal protein S12 methylthiotransferase RimO n=3 Tax=Firmicutes RepID=H1BAA0_9FIRM
L3_114_000M1_scaffold_300_21
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21833..23080
DNA (1248bp) protein (416aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BAA1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ56221.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_300_22
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

23240..23680
DNA (441bp) protein (147aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LV70_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC83728.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
hypothetical protein
L3_114_000M1_scaffold_300_23
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23744..24208
DNA (465bp) protein (155aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LV69_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ56223.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_300_24
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24684..25247
DNA (564bp) protein (188aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LV68_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR37320.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_300_25
unknown

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comp(25407..25622)
DNA (216bp) protein (72aa)

This feature has no annotations

L3_114_000M1_scaffold_300_26
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25771..26226
DNA (456bp) protein (152aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BAA6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ56226.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
DUF1307 family protein
L3_114_000M1_scaffold_300_27
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26570..27754)
DNA (1185bp) protein (395aa)
C-S lyase family protein {ECO:0000313|EMBL:EQJ56228.1}; EC=4.4.-.- {ECO:0000313|EMBL:EQJ56228.1};; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Uncharacterized protein n=3 Tax=Firmicutes RepID=H1BAA7_9FIRM
C-S lyase family protein
L3_114_000M1_scaffold_300_28
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27744..28823)
DNA (1080bp) protein (360aa)
Metallopeptidase M24 family protein n=1 Tax=Clostridium difficile P28 RepID=T4NLP7_CLODI
Metallopeptidase M24 family protein {ECO:0000313|EMBL:EQJ56229.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
metallopeptidase M24 family protein
L3_114_000M1_scaffold_300_29
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28924..30258)
DNA (1335bp) protein (445aa)
PTS system, lactose/cellobiose IIC component family protein (EC:2.7.1.69)
PTS system, lactose/cellobiose family IIC component n=5 Tax=Firmicutes RepID=H1B410_9FIRM
Permease IIC component {ECO:0000256|PIRNR:PIRNR006351}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_300_30
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(30415..30747)
DNA (333bp) protein (111aa)
PTS system, Lactose/Cellobiose specific IIB subunit n=7 Tax=Firmicutes RepID=E4LV62_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ENY84252.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
PTS system, Lactose/Cellobiose specific IIB subunit
Displaying items 1-30 of 40 in total

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