ggKbase home page

L3_114_000M1_scaffold_342

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_342_1
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1..192
DNA (192bp) protein (64aa)
amino acid ABC transporter ATPase component (EC:3.6.3.-)
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U2D4_9FIRM
Amino acid ABC transporter ATP-binding protein PAAT family (TC 3.A.1.3.-) {ECO:0000313|EMBL:CDC64982.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_342_2
unknown

Not on your lists

182..370
DNA (189bp) protein (63aa)

This feature has no annotations

L3_114_000M1_scaffold_342_3
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

399..1277
DNA (879bp) protein (293aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYB9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06089.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_4
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1528..2397
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUS8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCO06090.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_5
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2445..2939)
DNA (495bp) protein (165aa)
Putative lipoprotein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAU9_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06091.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_6
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3000..4523)
DNA (1524bp) protein (508aa)
YjeF C-terminal domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYA9_9FIRM
yjeF; Uncharacterized protein YjeF
YjeF C-terminal domain protein {ECO:0000313|EMBL:CDC64970.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_342_7
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4516..4899)
DNA (384bp) protein (128aa)
acpS; Holo-[acyl-carrier-protein] synthase (EC:2.7.8.7)
Holo-[acyl-carrier-protein] synthase {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000256|SAAS:SAAS00237208}; Short=Holo-ACP synthase {ECO:0000256|HAMAP-Rule:MF_00101};; EC=2.7.8.7 {ECO:0000256|HAMAP-Rule:MF_00101, ECO:0000313|EMBL:CCO06093.1};; 4'-phosphopantetheinyl transferase AcpS {ECO:0000256|HAMAP-Rule:MF_00101}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Holo-[acyl-carrier-protein] synthase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5D7_9FIRM
L3_114_000M1_scaffold_342_8
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4902..5408)
DNA (507bp) protein (169aa)
Conserved domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUS2_9FIRM
Conserved domain protein {ECO:0000313|EMBL:CDC64968.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_342_9
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5423..6049)
DNA (627bp) protein (209aa)
SH3 type 3 domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U2B4_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06095.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_10
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6083..6877)
DNA (795bp) protein (265aa)
Amidohydrolase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAU4_9FIRM
Amidohydrolase family protein {ECO:0000313|EMBL:CDC64966.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_342_11
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6982..7323)
DNA (342bp) protein (114aa)
Arsenate reductase and related protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SYA4_9FIRM
hypothetical protein
Arsenate reductase and related protein {ECO:0000313|EMBL:CDC64965.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_342_12
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7320..7781)
DNA (462bp) protein (154aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160054}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00518, ECO:0000256|SAAS:SAAS00160046};; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
dtd; D-tyrosyl-tRNA(Tyr) deacylase (D-amino acid-tRNA deacylase) (EC:3.1.-.-)
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5D2_9FIRM
L3_114_000M1_scaffold_342_13
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7781..8623)
DNA (843bp) protein (281aa)
lacX; galactose mutarotase related enzyme (EC:5.1.3.3)
Galactose mutarotase related enzyme {ECO:0000313|EMBL:CCO06099.1}; EC=5.1.3.3 {ECO:0000313|EMBL:CCO06099.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Aldose 1-epimerase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUR4_9FIRM
L3_114_000M1_scaffold_342_14
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8978..10504
DNA (1527bp) protein (509aa)
ATPase AAA family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U2A6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCO06100.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
hypothetical protein
L3_114_000M1_scaffold_342_15
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10713..13691
DNA (2979bp) protein (993aa)
CoA-substrate-specific enzyme activase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAT9_9FIRM
putative CoA-substrate-specific enzyme activase
Putative CoA-substrate-specific enzyme activase {ECO:0000313|EMBL:CCO06101.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_16
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13691..14956
DNA (1266bp) protein (422aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY97_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC64960.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_342_17
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15117..16559)
DNA (1443bp) protein (481aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGV7_RUMA7
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06103.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_18
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16540..17454)
DNA (915bp) protein (305aa)
ABC transporter ATPase component (EC:3.6.3.-)
ABC transporter ATPase component {ECO:0000313|EMBL:CCO06104.1}; EC=3.6.3.- {ECO:0000313|EMBL:CCO06104.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
ABC transporter related protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGV6_RUMA7
L3_114_000M1_scaffold_342_19
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17451..17828)
DNA (378bp) protein (126aa)
Transcriptional regulator, GntR family n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UGV5_RUMA7
Transcription elongation factor, GntR family
Transcription elongation factor, GntR family {ECO:0000313|EMBL:CCO06105.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_20
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18195..19193
DNA (999bp) protein (333aa)
HMGL family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6T5C6_9FIRM
HMGL family protein {ECO:0000313|EMBL:CDC64959.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein
L3_114_000M1_scaffold_342_21
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19394..19954
DNA (561bp) protein (187aa)
RNA polymerase sigma factor sigma-70 family n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUQ8_9FIRM
RNA polymerase sigma factor sigma-70 family {ECO:0000313|EMBL:CDC64958.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
sig16; RNA polymerase sigma factor
L3_114_000M1_scaffold_342_22
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19951..21423
DNA (1473bp) protein (491aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6U2A0_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CDC64957.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_342_23
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21514..22062)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC64955.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
hypothetical protein predicted by Glimmer/Critica
L3_114_000M1_scaffold_342_24
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22201..22395
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUQ1_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06110.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_25
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22461..23192
DNA (732bp) protein (244aa)
Oxidoreductase short chain dehydrogenase/reductase family protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY85_9FIRM
Oxidoreductase short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:CDC64950.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
FabG like protein
L3_114_000M1_scaffold_342_26
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23688..24263
DNA (576bp) protein (192aa)
vanY3; D-alanyl-D-alanine carboxypeptidase (EC:3.4.16.4)
D-alanyl-D-alanine carboxypeptidase {ECO:0000313|EMBL:CCO06112.1}; EC=3.4.16.4 {ECO:0000313|EMBL:CCO06112.1};; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
Serine-type D-Ala-D-Ala carboxypeptidase n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUP4_9FIRM
L3_114_000M1_scaffold_342_27
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24347..24529
DNA (183bp) protein (61aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAS3_9FIRM
hypothetical protein predicted by Glimmer/Critica
Uncharacterized protein {ECO:0000313|EMBL:CCO06113.1}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_28
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24714..25085
DNA (372bp) protein (124aa)
Iron dependent repressor N-terminal DNA binding domain protein n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SUN6_9FIRM
Transcriptional regulator
Iron dependent repressor N-terminal DNA binding domain protein {ECO:0000313|EMBL:CDC64943.1}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
L3_114_000M1_scaffold_342_29
Ruminococcus bicirculans, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25173..26336)
DNA (1164bp) protein (388aa)
Chaperone protein DnaJ n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6TAR8_9FIRM
dnaJ; Chaperone protein DnaJ
Chaperone protein DnaJ {ECO:0000256|HAMAP-Rule:MF_01152, ECO:0000256|SAAS:SAAS00053159}; TaxID=1160721 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus bicirculans.;"
L3_114_000M1_scaffold_342_30
Ruminococcus sp. CAG:57, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26482..28356)
DNA (1875bp) protein (625aa)
dnaK; molecular chaperone DnaK (EC:1.3.1.74)
Chaperone protein DnaK n=1 Tax=Ruminococcus sp. CAG:57 RepID=R6SY73_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=1262962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:57.;"
Displaying items 1-30 of 41 in total

View Taxonomy