ggKbase home page

L3_114_000M1_scaffold_391

Search features with annotation key words

Displaying items 1-30 of 36 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_391_1
Roseburia hominis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2..562
DNA (561bp) protein (187aa)
Site-specific recombinase n=1 Tax=Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183) RepID=G2T4G2_ROSHA
site-specific recombinase
Site-specific recombinase {ECO:0000313|EMBL:AEN97767.1}; TaxID=585394 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia hominis (strain DSM 16839 / NCIMB 14029 / A2-183).;"
L3_114_000M1_scaffold_391_2
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

786..1568
DNA (783bp) protein (261aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5MZH8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96878.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted divalent heavy-metal cations transporter
L3_114_000M1_scaffold_391_3
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1686..1925
DNA (240bp) protein (80aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N4L2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY96879.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Rad3-related DNA helicase
L3_114_000M1_scaffold_391_4
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1956..5075
DNA (3120bp) protein (1040aa)
Alpha-D-mannosidase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP41_9FIRM
Alpha-D-mannosidase {ECO:0000313|EMBL:CCY99146.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
alpha-D-mannosidase
L3_114_000M1_scaffold_391_5
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5256..5657)
DNA (402bp) protein (134aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N557_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99145.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_391_6
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5828..6586
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB87_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99144.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_114_000M1_scaffold_391_7
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7038..7643
DNA (606bp) protein (202aa)
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5T9_9FIRM
Predicted oxidoreductases (Related to aryl-alcohol dehydrogenases) {ECO:0000313|EMBL:CCY99143.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
L3_114_000M1_scaffold_391_8
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7655..7801
DNA (147bp) protein (49aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQC0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99142.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
L3_114_000M1_scaffold_391_9
Blautia sp. CAG:37, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7773..8069
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Blautia sp. CAG:37 RepID=R7JSX7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDE67069.1}; TaxID=1262757 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:37.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_391_10
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8268..9203
DNA (936bp) protein (312aa)
AraC-type DNA-binding domain-containing proteins n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N552_9FIRM
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CCY99140.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000M1_scaffold_391_11
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9289..9801
DNA (513bp) protein (171aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB83_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99139.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_391_12
unknown

Not on your lists

9988..10086
DNA (99bp) protein (33aa)

This feature has no annotations

L3_114_000M1_scaffold_391_13
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10123..11412
DNA (1290bp) protein (430aa)
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5T7_9FIRM
Carbohydrate ABC transporter substrate-binding protein CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CCY99138.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_391_14
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11466..12419
DNA (954bp) protein (318aa)
ABC transporter permease protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQB5_9FIRM
ABC transporter permease protein {ECO:0000313|EMBL:CCY99137.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
lactose transport system (permease)
L3_114_000M1_scaffold_391_15
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12412..13242
DNA (831bp) protein (277aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP30_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99136.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_391_16
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13364..15388
DNA (2025bp) protein (675aa)
Beta-galactosidase {ECO:0000256|PIRNR:PIRNR001084}; Short=Beta-gal {ECO:0000256|PIRNR:PIRNR001084};; EC=3.2.1.23 {ECO:0000256|PIRNR:PIRNR001084};; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Beta-galactosidase (EC:3.2.1.23)
Beta-galactosidase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB78_9FIRM
L3_114_000M1_scaffold_391_17
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15430..16581
DNA (1152bp) protein (384aa)
Phosphotransferase enzyme family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5T2_9FIRM
Phosphotransferase enzyme family {ECO:0000313|EMBL:CCY99133.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Phosphotransferase enzyme family.
L3_114_000M1_scaffold_391_18
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16616..18778
DNA (2163bp) protein (721aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP25_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99131.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
conserved hypothetical protein TIGR02336
L3_114_000M1_scaffold_391_19
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19076..20530
DNA (1455bp) protein (485aa)
Signal transduction histidine kinase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N543_9FIRM
Signal transduction histidine kinase {ECO:0000313|EMBL:CCY99130.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Signal transduction histidine kinase
L3_114_000M1_scaffold_391_20
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20783..21787
DNA (1005bp) protein (335aa)
Heavy metal-associated domain protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5S7_9FIRM
Heavy metal-associated domain protein {ECO:0000313|EMBL:CCY99128.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
heavy metal transport/detoxification protein
L3_114_000M1_scaffold_391_21
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21853..22146
DNA (294bp) protein (98aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99126.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_391_22
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22292..23128
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N539_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99125.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_391_23
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23208..23720
DNA (513bp) protein (171aa)
Acetyltransferase (GNAT) family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB71_9FIRM
Acetyltransferase (GNAT) family {ECO:0000313|EMBL:CCY99124.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Acetyltransferase (GNAT) family.
L3_114_000M1_scaffold_391_24
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23800..24660
DNA (861bp) protein (287aa)
Esterase/lipase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5S0_9FIRM
Esterase/lipase {ECO:0000313|EMBL:CCY99123.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Esterase/lipase
L3_114_000M1_scaffold_391_25
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24683..25093
DNA (411bp) protein (137aa)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Peptide deformylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQA5_9FIRM
N-formylmethionyl-tRNA deformylase
L3_114_000M1_scaffold_391_26
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25148..26008
DNA (861bp) protein (287aa)
Purine nucleoside phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; EC=2.4.2.1 {ECO:0000256|PIRNR:PIRNR000477};; Inosine-guanosine phosphorylase {ECO:0000256|PIRNR:PIRNR000477}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
purine nucleoside phosphorylase I, inosine and guanosine-specific (EC:2.4.2.1)
Purine nucleoside phosphorylase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP16_9FIRM
L3_114_000M1_scaffold_391_27
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26048..27037
DNA (990bp) protein (330aa)
Guanosine polyphosphate pyrophosphohydrolases/synthetases n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5N5R7_9FIRM
Guanosine polyphosphate pyrophosphohydrolases/synthetases {ECO:0000313|EMBL:CCY99118.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
Guanosine polyphosphate pyrophosphohydrolases/synthetases
L3_114_000M1_scaffold_391_28
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27050..28381
DNA (1332bp) protein (444aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NP12_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CCY99116.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_391_29
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28601..29092)
DNA (492bp) protein (164aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NB64_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY99114.1}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
hypothetical protein
L3_114_000M1_scaffold_391_30
Ruminococcus sp. CAG:17, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29555..30850
DNA (1296bp) protein (432aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMAP-Rule:MF_00318}; 2-phosphoglycerate dehydratase {ECO:0000256|HAMAP-Rule:MF_00318}; TaxID=1262951 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:17.;"
enolase (EC:4.2.1.11)
Enolase n=1 Tax=Ruminococcus sp. CAG:17 RepID=R5NQ97_9FIRM
Displaying items 1-30 of 36 in total

View Taxonomy