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L3_114_000M1_scaffold_397

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Displaying 29 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_397_1
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(1..279)
DNA (279bp) protein (93aa)
Uncharacterized protein n=1 Tax=Clostridium innocuum 2959 RepID=N9WCM5_CLOIN
Uncharacterized protein {ECO:0000313|EMBL:ENY85212.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
L3_114_000M1_scaffold_397_2
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(708..2291)
DNA (1584bp) protein (528aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=4 Tax=Firmicutes RepID=H1ATT1_9FIRM
Diguanylate cyclase domain protein {ECO:0000313|EMBL:EQJ58558.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
PAS/PAC sensor-containing diguanylate cyclase
L3_114_000M1_scaffold_397_3
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2788..4329)
DNA (1542bp) protein (514aa)
Diguanylate cyclase (GGDEF) domain protein n=3 Tax=Firmicutes RepID=E4LPR0_9CLOT
Diguanylate cyclase (GGDEF) domain protein {ECO:0000313|EMBL:EFR39131.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_397_4
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4795..6486)
DNA (1692bp) protein (564aa)
ABC transporter, ATP-binding protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LPR1_9CLOT
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFR39248.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
ABC transporter ATP-binding protein
L3_114_000M1_scaffold_397_5
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6479..7252)
DNA (774bp) protein (258aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=H1ATT4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EQJ58563.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_397_6
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(7826..8362)
DNA (537bp) protein (179aa)
Ribosomal subunit interface protein n=7 Tax=Firmicutes RepID=E4LPR4_9CLOT
Ribosomal subunit interface protein {ECO:0000313|EMBL:ENY85205.1}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ribosomal subunit interface protein
L3_114_000M1_scaffold_397_7
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8565..8984
DNA (420bp) protein (140aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LPR5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ58566.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
hypothetical protein
L3_114_000M1_scaffold_397_8
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9363..13466)
DNA (4104bp) protein (1368aa)
Pilin isopeptide linkage domain protein n=4 Tax=Firmicutes RepID=E4LPR6_9CLOT
Pilin isopeptide linkage domain protein {ECO:0000313|EMBL:EFR39194.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LPXTG-motif cell wall anchor domain-containing protein
L3_114_000M1_scaffold_397_9
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13450..13599)
DNA (150bp) protein (50aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LPR7_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EQJ58570.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_397_10
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13889..14818)
DNA (930bp) protein (310aa)
M19 family membrane dipeptidase (EC:3.4.13.19)
Renal dipeptidase family protein n=3 Tax=Firmicutes RepID=E4LPR8_9CLOT
Renal dipeptidase family protein {ECO:0000313|EMBL:EFR39193.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_397_11
Erysipelotrichaceae bacterium 2_2_44A, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(14931..15905)
DNA (975bp) protein (325aa)
Uncharacterized protein n=6 Tax=Firmicutes RepID=E4LPR9_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EGX76959.1}; TaxID=457422 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 2_2_44A.;"
hypothetical protein
L3_114_000M1_scaffold_397_12
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(16004..17857)
DNA (1854bp) protein (618aa)
ATP-dependent zinc metalloprotease FtsH {ECO:0000256|HAMAP-Rule:MF_01458}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_01458};; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
ATP-dependent metalloprotease FtsH (EC:3.4.24.-)
ATP-dependent zinc metalloprotease FtsH n=5 Tax=Firmicutes RepID=E4LPS0_9CLOT
L3_114_000M1_scaffold_397_13
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18464..19621
DNA (1158bp) protein (386aa)
Uncharacterized protein n=2 Tax=Clostridiales RepID=E4LPS1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39119.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_397_14
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19700..20401)
DNA (702bp) protein (234aa)
TIGR00659 family protein n=5 Tax=Firmicutes RepID=H1ATU3_9FIRM
Putative TIGR00659 family protein {ECO:0000313|EMBL:EFR39136.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
lrgB-like family protein
L3_114_000M1_scaffold_397_15
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20398..20751)
DNA (354bp) protein (118aa)
LrgA family protein n=2 Tax=Firmicutes RepID=E4LPS3_9CLOT
LrgA family protein {ECO:0000313|EMBL:EFR39123.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
LrgA family protein
L3_114_000M1_scaffold_397_16
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20748..22631)
DNA (1884bp) protein (628aa)
UPF0313 protein HMPREF9406_0631 n=2 Tax=Firmicutes RepID=E4LPS4_9CLOT
UPF0313 protein HMPREF9406_0631 {ECO:0000256|HAMAP-Rule:MF_01251}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Fe-S oxidoreductase
L3_114_000M1_scaffold_397_17
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23608..24528)
DNA (921bp) protein (307aa)
CorA-like Mg2+ transporter family protein n=2 Tax=Clostridiales RepID=T4NST7_CLODI
Putative magnesium and cobalt transport protein CorA {ECO:0000313|EMBL:EFR39214.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
magnesium and cobalt transporter
L3_114_000M1_scaffold_397_18
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24854..25705)
DNA (852bp) protein (284aa)
Putative membrane protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LPS7_9CLOT
Putative membrane protein {ECO:0000313|EMBL:EFR39184.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_114_000M1_scaffold_397_19
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25698..27161)
DNA (1464bp) protein (488aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=E4LPS8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39133.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
Domain of unknown function(DUF2779).
L3_114_000M1_scaffold_397_20
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27211..28152)
DNA (942bp) protein (314aa)
HTH domain protein n=3 Tax=Firmicutes RepID=E4LPS9_9CLOT
WYL domain protein {ECO:0000313|EMBL:EQJ58585.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
Predicted transcriptional regulator
L3_114_000M1_scaffold_397_21
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28165..28521)
DNA (357bp) protein (119aa)
Uncharacterized protein n=1 Tax=Clostridium sp. HGF2 RepID=E4LPT0_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39128.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
L3_114_000M1_scaffold_397_22
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28785..29405)
DNA (621bp) protein (207aa)
Uncharacterized protein n=3 Tax=Firmicutes RepID=E4LPT1_9CLOT
Putative lipoprotein {ECO:0000313|EMBL:EQJ58588.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
L3_114_000M1_scaffold_397_23
Erysipelotrichaceae bacterium 6_1_45, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(29450..30703)
DNA (1254bp) protein (418aa)
UV damage endonuclease UvdE n=1 Tax=Erysipelotrichaceae bacterium 6_1_45 RepID=H1BGG5_9FIRM
UV damage endonuclease UvdE {ECO:0000313|EMBL:EHO20562.1}; TaxID=469614 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae.;" source="Erysipelotrichaceae bacterium 6_1_45.;"
uvsE; putative UV damage endonuclease
L3_114_000M1_scaffold_397_24
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30897..31673
DNA (777bp) protein (259aa)
HAD hydrolase, family IIB n=5 Tax=Firmicutes RepID=E4LPT4_9CLOT
HAD hydrolase, IIB family protein {ECO:0000313|EMBL:EQJ58591.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
HAD-superfamily hydrolase, subfamily IIB
L3_114_000M1_scaffold_397_25
Peptoclostridium difficile, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32092..32529)
DNA (438bp) protein (146aa)
Uncharacterized protein n=5 Tax=Firmicutes RepID=G1VM23_9FIRM
MarR family protein {ECO:0000313|EMBL:EQJ58593.1}; TaxID=1151410 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Peptoclostridium difficile P28.;"
multidrug resistance operon repressor
L3_114_000M1_scaffold_397_26
Clostridium sp. HGF2, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32687..33754
DNA (1068bp) protein (356aa)
Uncharacterized protein n=4 Tax=Firmicutes RepID=E4LPT8_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EFR39166.1}; TaxID=908340 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. HGF2.;"
hypothetical protein
L3_114_000M1_scaffold_397_27
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(33996..34124)
DNA (129bp) protein (43aa)
Uncharacterized protein n=7 Tax=Firmicutes RepID=G1VM21_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC86525.1}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
L3_114_000M1_scaffold_397_28
[Clostridium] innocuum, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(34212..34787)
DNA (576bp) protein (192aa)
Potassium-transporting ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00276};; ATP phosphohydrolase [potassium-transporting] C chain {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-binding and translocating subunit C {ECO:0000256|HAMAP-Rule:MF_00276}; Potassium-translocating ATPase C chain {ECO:0000256|HAMAP-Rule:MF_00276}; TaxID=999413 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] innocuum 2959.;"
potassium-transporting ATPase subunit C (EC:3.6.3.12)
Potassium-transporting ATPase C chain n=6 Tax=Firmicutes RepID=G1VM20_9FIRM
L3_114_000M1_scaffold_397_29
Erysipelotrichaceae bacterium CAG:64, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

comp(34799..35929)
DNA (1131bp) protein (377aa)
Potassium-transporting ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; EC=3.6.3.12 {ECO:0000256|HAMAP-Rule:MF_00285};; ATP phosphohydrolase [potassium-transporting] B chain {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-binding and translocating subunit B {ECO:0000256|HAMAP-Rule:MF_00285}; Potassium-translocating ATPase B chain {ECO:0000256|HAMAP-Rule:MF_00285}; TaxID=1262981 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; environmental samples.;" source="Erysipelotrichaceae bacterium CAG:64.;"
kdpB; K+-transporting ATPase, B subunit (EC:3.6.3.12)
Potassium-transporting ATPase B chain n=4 Tax=Firmicutes RepID=E4LPU1_9CLOT
Displaying 29 items

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