ggKbase home page

L3_114_000M1_scaffold_401

Search features with annotation key words

Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_401_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

223..4155
DNA (3933bp) protein (1311aa)
BNR/Asp-box repeat protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRC9_9FIRM
BNR/Asp-box repeat protein {ECO:0000313|EMBL:EDY32151.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
putative sialidase (neuraminidase)
L3_114_000M1_scaffold_401_2
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


4692..7340
DNA (2649bp) protein (883aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=2 Tax=Ruminococcus lactaris RepID=B5CRD0_9FIRM
L3_114_000M1_scaffold_401_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7361..9577
DNA (2217bp) protein (739aa)
Arylsulfatase {ECO:0000313|EMBL:EDY32153.1}; EC=3.1.6.- {ECO:0000313|EMBL:EDY32153.1};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Arylsulfatase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRD1_9FIRM
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_114_000M1_scaffold_401_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9654..10973
DNA (1320bp) protein (440aa)
folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.12 6.3.2.17)
Bifunctional protein FolC n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRD2_9FIRM
Bifunctional protein FolC {ECO:0000313|EMBL:EDY32154.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_401_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11050..11193
DNA (144bp) protein (48aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRD3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32155.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_401_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11210..12583
DNA (1374bp) protein (458aa)
Tetratricopeptide repeat protein n=2 Tax=Ruminococcus lactaris RepID=B5CRD4_9FIRM
Tetratricopeptide repeat protein {ECO:0000313|EMBL:EDY32156.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_401_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12661..12975
DNA (315bp) protein (105aa)
Anti-sigma factor antagonist n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CRD5_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
anti-anti-sigma factor
L3_114_000M1_scaffold_401_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12972..13427
DNA (456bp) protein (152aa)
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4V1_9FIRM
Anti-sigma F factor {ECO:0000313|EMBL:ETD22394.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_401_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13406..14119
DNA (714bp) protein (238aa)
RNA polymerase sigma factor n=2 Tax=Ruminococcus lactaris RepID=B5CRD7_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
RNA polymerase sigma-F factor
L3_114_000M1_scaffold_401_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14327..14581
DNA (255bp) protein (85aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRD9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32161.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_401_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14571..15221
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5P8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22397.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Stage V sporulation protein AA.
L3_114_000M1_scaffold_401_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15221..15637
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4S3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22398.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_401_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15647..16975)
DNA (1329bp) protein (443aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4V6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22399.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Na+-driven multidrug efflux pump
L3_114_000M1_scaffold_401_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16966..17442)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5U9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22400.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_401_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17719..18447
DNA (729bp) protein (243aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRE4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32166.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_401_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18648..21572
DNA (2925bp) protein (975aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5Q3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22402.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Predicted Zn-dependent peptidases, insulinase-like
L3_114_000M1_scaffold_401_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21604..22506
DNA (903bp) protein (301aa)
GTPase Era n=2 Tax=Ruminococcus lactaris RepID=B5CRE7_9FIRM
GTPase Era {ECO:0000256|HAMAP-Rule:MF_00367, ECO:0000256|SAAS:SAAS00085723}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
GTP-binding protein Era
L3_114_000M1_scaffold_401_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22578..23285
DNA (708bp) protein (236aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRE8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32170.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
PAP2 superfamily.
L3_114_000M1_scaffold_401_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23290..24339
DNA (1050bp) protein (350aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CRE9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32171.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_401_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24323..24943
DNA (621bp) protein (207aa)
Phosphatidylserine synthase (EC:2.7.8.8)
CDP-alcohol phosphatidyltransferase n=2 Tax=Ruminococcus lactaris RepID=B5CRF0_9FIRM
CDP-alcohol phosphatidyltransferase {ECO:0000313|EMBL:EDY32172.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_401_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24969..25841
DNA (873bp) protein (291aa)
Phosphatidylserine decarboxylase proenzyme {ECO:0000256|SAAS:SAAS00154492}; EC=4.1.1.65 {ECO:0000256|SAAS:SAAS00093350};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Phosphatidylserine decarboxylase (EC:4.1.1.65)
Phosphatidylserine decarboxylase n=2 Tax=Ruminococcus lactaris RepID=B5CRF1_9FIRM
L3_114_000M1_scaffold_401_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25927..26574)
DNA (648bp) protein (216aa)
Cyclic nucleotide-binding domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CRF2_9FIRM
Cyclic nucleotide-binding domain protein {ECO:0000313|EMBL:EDY32174.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_401_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26662..27381
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4W4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22409.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_401_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27527..27856
DNA (330bp) protein (110aa)
Cupin domain protein n=2 Tax=Ruminococcus lactaris RepID=B5CRF4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22410.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Uncharacterized conserved protein, contains double-stranded beta-helix domain
L3_114_000M1_scaffold_401_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28191..29510)
DNA (1320bp) protein (440aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C6M9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22411.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
L3_114_000M1_scaffold_401_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29510..30229)
DNA (720bp) protein (240aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C5R5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22412.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Response regulator of the LytR/AlgR family
L3_114_000M1_scaffold_401_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30459..34301
DNA (3843bp) protein (1281aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4T8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22413.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Phosphatidylinositol-specific phospholipase C, X domain.
L3_114_000M1_scaffold_401_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34469..35248
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8C4W8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD22414.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
hypothetical protein
Displaying 28 items

View Taxonomy