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L3_114_000M1_scaffold_406

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_406_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3..734)
DNA (732bp) protein (244aa)
Glycosyl hydrolase, family 31 {ECO:0000313|EMBL:EEU99701.1}; EC=3.2.1.- {ECO:0000313|EMBL:EEU99701.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Alpha-glucosidases, family 31 of glycosyl hydrolases n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQ28_9FIRM
Alpha-glucosidases, family 31 of glycosyl hydrolases
L3_114_000M1_scaffold_406_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(841..3180)
DNA (2340bp) protein (780aa)
BNR/Asp-box repeat n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVT5_9FIRM
BNR/Asp-box repeat.
BNR/Asp-box repeat {ECO:0000313|EMBL:CBL11475.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_406_3
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3625..4872)
DNA (1248bp) protein (416aa)
Rhodanese-like protein n=2 Tax=Roseburia RepID=C7GD69_9FIRM
PP-loop family protein {ECO:0000313|EMBL:CDA56893.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Predicted ATPase of the PP-loop superfamily implicated in cell cycle control
L3_114_000M1_scaffold_406_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4900..6420)
DNA (1521bp) protein (507aa)
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; EC=6.3.2.13 {ECO:0000256|HAMAP-Rule:MF_00208};; Meso-A2pm-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; Meso-diaminopimelate-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-L-Ala-D-Glu:meso-diaminopimelate ligase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,6-diaminopimelate ligase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GD70_9FIRM
UDP-N-acetylmuramyl-tripeptide synthetase
L3_114_000M1_scaffold_406_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6662..7516)
DNA (855bp) protein (285aa)
diaminopimelate epimerase (EC:5.1.1.7)
Diaminopimelate epimerase {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028055}; Short=DAP epimerase {ECO:0000256|HAMAP-Rule:MF_00197};; EC=5.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00197, ECO:0000256|SAAS:SAAS00028063};; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Diaminopimelate epimerase n=2 Tax=Roseburia RepID=D4KQ25_9FIRM
L3_114_000M1_scaffold_406_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7544..8728)
DNA (1185bp) protein (395aa)
cystathionine gamma-synthase (EC:2.5.1.48)
Cystathionine gamma-synthase {ECO:0000313|EMBL:CBL11473.1}; EC=2.5.1.48 {ECO:0000313|EMBL:CBL11473.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Cystathionine gamma-synthase n=2 Tax=Roseburia intestinalis RepID=D4KQ24_9FIRM
L3_114_000M1_scaffold_406_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8988..9836
DNA (849bp) protein (283aa)
AraC-type DNA-binding domain-containing proteins n=3 Tax=Roseburia RepID=D4KVT2_9FIRM
AraC-type DNA-binding domain-containing proteins
AraC-type DNA-binding domain-containing proteins {ECO:0000313|EMBL:CDA56901.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_406_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9885..11543)
DNA (1659bp) protein (553aa)
Inorganic pyrophosphatase/exopolyphosphatase (EC:3.6.1.1)
Inorganic pyrophosphatase/exopolyphosphatase n=3 Tax=Roseburia RepID=D4KQ22_9FIRM
Inorganic pyrophosphatase/exopolyphosphatase {ECO:0000313|EMBL:CDA56903.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_406_9
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11665..12531)
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B122_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56905.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_406_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12779..14251)
DNA (1473bp) protein (491aa)
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2) n=2 Tax=Roseburia RepID=D4KQ21_9FIRM
PTS system N-acetylglucosamine-specific IIB component, Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component, Glc family (TC 4.A.1.1.2)
PTS system N-acetylglucosamine-specific IIB component Glc family (TC 4.A.1.1.2)/PTS system N-acetylglucosamine-specific IIC component Glc family (TC 4.A.1.1.2) {ECO:0000313|EMBL:CDA56906.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_406_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14387..14869)
DNA (483bp) protein (161aa)
PTS system IIA component, Glc family (TC 4.A.1) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQ20_9FIRM
PTS system IIA component, Glc family (TC 4.A.1)
PTS system, glucose subfamily, IIA component {ECO:0000313|EMBL:EEV00225.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_406_12
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14905..15738)
DNA (834bp) protein (278aa)
Transcriptional antiterminator, BglG family n=3 Tax=Roseburia intestinalis RepID=D4KQ19_9FIRM
transcriptional antiterminator, BglG family
Transcriptional antiterminator, BglG family {ECO:0000313|EMBL:CBL11467.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_406_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15977..16234)
DNA (258bp) protein (86aa)
Phosphotransferase System HPr (HPr) Family n=4 Tax=Roseburia RepID=D4KQ18_9FIRM
Phosphotransferase System HPr (HPr) Family
Phosphocarrier, HPr family {ECO:0000313|EMBL:EEV00227.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_406_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16258..17871)
DNA (1614bp) protein (538aa)
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732, ECO:0000313|EMBL:CBL08969.1};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQ17_9FIRM
L3_114_000M1_scaffold_406_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18288..21833)
DNA (3546bp) protein (1182aa)
pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric (EC:1.2.7.-)
Pyruvate-flavodoxin oxidoreductase {ECO:0000256|PIRNR:PIRNR000159}; EC=1.2.7.- {ECO:0000256|PIRNR:PIRNR000159, ECO:0000313|EMBL:CBL08968.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Pyruvate-flavodoxin oxidoreductase n=4 Tax=Roseburia RepID=D4KQ16_9FIRM
L3_114_000M1_scaffold_406_16
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21996..25136)
DNA (3141bp) protein (1047aa)
Diguanylate cyclase (GGDEF) domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KQ15_9FIRM
Diguanylate cyclase (GGDEF) domain {ECO:0000313|EMBL:CDA56916.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
diguanylate cyclase (GGDEF) domain
L3_114_000M1_scaffold_406_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25464..27104
DNA (1641bp) protein (547aa)
ATPase components of ABC transporters with duplicated ATPase domains n=4 Tax=Roseburia RepID=D4KQ14_9FIRM
ATPase components of ABC transporters with duplicated ATPase domains
ATPase components of ABC transporters with duplicated ATPase domains {ECO:0000313|EMBL:CBL11461.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_406_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27156..28025)
DNA (870bp) protein (290aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B7L1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA56919.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_406_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28207..28857)
DNA (651bp) protein (217aa)
haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL11460.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CBL11460.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KVS0_9FIRM
L3_114_000M1_scaffold_406_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29077..30237)
DNA (1161bp) protein (387aa)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes (EC:2.8.1.7)
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes n=3 Tax=Roseburia RepID=D4KQ10_9FIRM
Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes {ECO:0000313|EMBL:CDA56923.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_406_21
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30309..31676
DNA (1368bp) protein (456aa)
Putative SpoVB related membrane protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B7L8_9FIRM
Putative SpoVB related membrane protein {ECO:0000313|EMBL:CDA56924.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Na+-driven multidrug efflux pump
L3_114_000M1_scaffold_406_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31743..32696)
DNA (954bp) protein (318aa)
DnaJ-class molecular chaperone with C-terminal Zn finger domain n=2 Tax=Roseburia intestinalis RepID=D4KQ09_9FIRM
DnaJ-class molecular chaperone with C-terminal Zn finger domain
DnaJ-class molecular chaperone with C-terminal Zn finger domain {ECO:0000313|EMBL:CBL08961.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_406_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32904..33542)
DNA (639bp) protein (213aa)
Predicted xylanase/chitin deacetylase n=3 Tax=Roseburia intestinalis RepID=D4KQ08_9FIRM
Predicted xylanase/chitin deacetylase
Predicted xylanase/chitin deacetylase {ECO:0000313|EMBL:CBL08960.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_406_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33643..35592)
DNA (1950bp) protein (650aa)
Ferrous iron transporter FeoB n=2 Tax=Roseburia RepID=D4KQ07_9FIRM
ferrous iron transporter FeoB
Ferrous iron transporter FeoB {ECO:0000313|EMBL:CBL08959.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying 24 items

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