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L3_114_000M1_scaffold_419

Search features with annotation key words

Displaying items 1-30 of 37 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_419_1

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644..1198
DNA (555bp) protein (185aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1U4L9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC73285.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_419_2
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1370..2326
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG06_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99237.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
hypothetical protein
L3_114_000M1_scaffold_419_3
unknown

Not on your lists

2383..2472
DNA (90bp) protein (30aa)

This feature has no annotations

L3_114_000M1_scaffold_419_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2547..3374
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG07_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99238.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_419_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4001..4246
DNA (246bp) protein (82aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99239.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_419_6
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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4269..4682
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BRD2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA55842.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_419_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4701..5036
DNA (336bp) protein (112aa)
Uncharacterized protein conserved in bacteria n=4 Tax=Roseburia RepID=D4KL94_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBL07646.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_419_8
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5076..6533
DNA (1458bp) protein (486aa)
MATE efflux family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG11_9FIRM
putative efflux protein, MATE family
MATE efflux family protein {ECO:0000313|EMBL:EEU99242.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_419_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6602..7972
DNA (1371bp) protein (457aa)
MATE efflux family protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG12_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EEU99243.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_419_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8244..9119
DNA (876bp) protein (292aa)
Thioredoxin reductase (EC:1.8.1.9)
Thioredoxin reductase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AV98_9FIRM
Thioredoxin reductase {ECO:0000313|EMBL:CDA55838.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_419_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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9238..9549
DNA (312bp) protein (104aa)
Thioredoxin n=2 Tax=Roseburia RepID=C7GG15_9FIRM
Thioredoxin {ECO:0000256|PIRNR:PIRNR000077}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
thioredoxin
L3_114_000M1_scaffold_419_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9631..10080
DNA (450bp) protein (150aa)
Transcriptional regulator, MarR family n=2 Tax=Roseburia RepID=C7GG16_9FIRM
Transcriptional regulator MarR family {ECO:0000313|EMBL:CDA55836.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
MarR family transcriptional regulator
L3_114_000M1_scaffold_419_13
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10238..11503
DNA (1266bp) protein (422aa)
His Kinase A (Phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L044_9FIRM
His Kinase A (phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain.
His Kinase A (Phosphoacceptor) domain./Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase./Response regulator receiver domain {ECO:0000313|EMBL:CBL12984.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_419_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11587..12882
DNA (1296bp) protein (432aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG18_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99249.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Tetratricopeptide repeat./Helix-turn-helix.
L3_114_000M1_scaffold_419_15
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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13047..14285
DNA (1239bp) protein (413aa)
Major Facilitator Superfamily n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLA5_9FIRM
Major Facilitator Superfamily.
Major Facilitator Superfamily {ECO:0000313|EMBL:CBL07657.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_419_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14309..15328)
DNA (1020bp) protein (340aa)
Transcriptional regulators (EC:5.1.1.1)
Transcriptional regulator, LacI family n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG20_9FIRM
Transcriptional regulator, LacI family {ECO:0000313|EMBL:EEU99214.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_419_17
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15612..17093
DNA (1482bp) protein (494aa)
4-alpha-glucanotransferase {ECO:0000256|RuleBase:RU361207}; EC=2.4.1.25 {ECO:0000256|RuleBase:RU361207};; Amylomaltase {ECO:0000256|RuleBase:RU361207}; Disproportionating enzyme {ECO:0000256|RuleBase:RU361207}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
4-alpha-glucanotransferase (EC:2.4.1.25)
4-alpha-glucanotransferase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9U7_9FIRM
L3_114_000M1_scaffold_419_18
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17178..18515
DNA (1338bp) protein (446aa)
Extracellular solute binding ABC transporter n=2 Tax=Roseburia RepID=R6AXR7_9FIRM
Extracellular solute binding ABC transporter {ECO:0000313|EMBL:CDA55830.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_419_19
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18601..19983
DNA (1383bp) protein (461aa)
Sugar ABC transporter permease protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B446_9FIRM
Sugar ABC transporter permease protein {ECO:0000313|EMBL:CDA55829.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_419_20
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19983..20894
DNA (912bp) protein (304aa)
Carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-) n=3 Tax=Roseburia RepID=D4L039_9FIRM
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA55828.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_419_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21245..23008
DNA (1764bp) protein (588aa)
Glycosidases (EC:3.2.1.1)
Alpha amylase, catalytic domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG27_9FIRM
Alpha amylase, catalytic domain protein {ECO:0000313|EMBL:EEU99220.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_419_22
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23958..24611)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GG28_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU99221.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Bacterial extracellular solute-binding protein.
L3_114_000M1_scaffold_419_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24762..25340)
DNA (579bp) protein (193aa)
Transcriptional regulator n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L036_9FIRM
Transcriptional regulator
Transcriptional regulator {ECO:0000313|EMBL:CBL12976.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_419_24
Clostridium sp. CAG:242, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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25628..27757
DNA (2130bp) protein (710aa)
Drug exporter RND family n=1 Tax=Clostridium sp. CAG:242 RepID=R6D3Q0_9CLOT
Drug exporter RND family {ECO:0000313|EMBL:CDA78751.1}; TaxID=1262783 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:242.;"
hypothetical protein
L3_114_000M1_scaffold_419_25
Lachnospiraceae bacterium 3_1_57FAA_CT1, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27750..30164
DNA (2415bp) protein (805aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:242 RepID=R6CSX5_9CLOT
X-X-X-Leu-X-X-Gly heptad repeat protein {ECO:0000313|EMBL:EGN40226.1}; TaxID=658086 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 3_1_57FAA_CT1.;"
hypothetical protein
L3_114_000M1_scaffold_419_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31056..33251)
DNA (2196bp) protein (732aa)
Glycogen debranching enzyme n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4L035_9FIRM
Glycogen debranching enzyme {ECO:0000313|EMBL:CBL12975.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Glycogen debranching enzyme
L3_114_000M1_scaffold_419_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

33596..34093
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B9U1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA55821.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_419_28
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34120..34815
DNA (696bp) protein (232aa)
ABC-type transport system involved in Fe-S cluster assembly, ATPase component n=3 Tax=Roseburia RepID=D4L033_9FIRM
ABC-type transport system involved in Fe-S cluster assembly, ATPase component
ABC-type transport system involved in Fe-S cluster assembly ATPase component {ECO:0000313|EMBL:CDA55820.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_419_29
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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34824..35741
DNA (918bp) protein (306aa)
SufB/sufD domain protein n=2 Tax=Roseburia RepID=C7GG35_9FIRM
ABC transporter system permease involved in Fe-S cluster assembly {ECO:0000313|EMBL:CDA55819.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
ABC-type transport system involved in Fe-S cluster assembly, permease component
L3_114_000M1_scaffold_419_30
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35746..36003)
DNA (258bp) protein (86aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KLB7_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL07669.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Displaying items 1-30 of 37 in total

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