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L3_114_000M1_scaffold_440

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_440_1
Ruminococcus sp. SR1/5, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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15..215
DNA (201bp) protein (67aa)
Predicted transcriptional regulators n=7 Tax=root RepID=D4JJU4_9FIRM
hypothetical protein
Predicted transcriptional regulators {ECO:0000313|EMBL:CBL18677.1}; TaxID=657323 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. SR1/5.;"
L3_114_000M1_scaffold_440_2

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comp(273..707)
DNA (435bp) protein (145aa)
Flavodoxin n=1 Tax=human gut metagenome RepID=K1U579_9ZZZZ
Flavodoxin {ECO:0000313|EMBL:EKC80427.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
Flavodoxins
L3_114_000M1_scaffold_440_3
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(704..1078)
DNA (375bp) protein (125aa)
Uncharacterized protein conserved in bacteria n=1 Tax=Coprococcus catus GD/7 RepID=D4J9B4_9FIRM
hypothetical protein
Uncharacterized protein conserved in bacteria {ECO:0000313|EMBL:CBK80935.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
L3_114_000M1_scaffold_440_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1334..1582
DNA (249bp) protein (83aa)
Bacterial mobilisation protein (MobC) n=3 Tax=Clostridiales RepID=D4J9B6_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ETD19474.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_440_5
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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1549..2430
DNA (882bp) protein (294aa)
Relaxase/Mobilisation nuclease domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3T8_9FIRM
Relaxase/Mobilisation nuclease domain.
Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CBL25900.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_440_6
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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2505..2810
DNA (306bp) protein (102aa)
Relaxase/Mobilisation nuclease domain n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3M3_9FIRM
Relaxase/Mobilisation nuclease domain.
Relaxase/Mobilisation nuclease domain {ECO:0000313|EMBL:CBL25835.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_440_7
Peptoniphilus duerdenii, Peptoniphilus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2984..3403)
DNA (420bp) protein (140aa)
Iron dependent repressor DNA binding domain protein n=1 Tax=Peptoniphilus duerdenii ATCC BAA-1640 RepID=E0NK30_9FIRM
Iron dependent repressor DNA binding domain protein {ECO:0000313|EMBL:EFM25975.1}; TaxID=862517 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptoniphilaceae; Peptoniphilus.;" source="Peptoniphilus duerdenii ATCC BAA-1640.;"
Mn-dependent transcriptional regulator
L3_114_000M1_scaffold_440_8
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3612..5405)
DNA (1794bp) protein (598aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DF07_CLOSC
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK76281.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_114_000M1_scaffold_440_9
Coprococcus sp. ART55/1, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5351..7165)
DNA (1815bp) protein (605aa)
ABC-type multidrug transport system, ATPase and permease components n=1 Tax=Coprococcus sp. ART55/1 RepID=D5HHM1_9FIRM
ABC-type multidrug transport system, ATPase and permease components
ABC-type multidrug transport system, ATPase and permease components {ECO:0000313|EMBL:CBK82276.1}; TaxID=751585 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus sp. ART55/1.;"
L3_114_000M1_scaffold_440_10
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(7315..7932)
DNA (618bp) protein (206aa)
Uncharacterized protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2D6E5_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:ERI75101.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
conserved hypothetical integral membrane protein TIGR02185
L3_114_000M1_scaffold_440_11
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7971..9383)
DNA (1413bp) protein (471aa)
ATPase components of various ABC-type transport systems, contain duplicated ATPase n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DF10_CLOSC
ATPase components of various ABC-type transport systems, contain duplicated ATPase
ATPase components of various ABC-type transport systems, contain duplicated ATPase {ECO:0000313|EMBL:CBK76284.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_114_000M1_scaffold_440_12
Clostridium sp. ATCC BAA-442, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9385..10080)
DNA (696bp) protein (232aa)
Cobalt transport protein n=1 Tax=Clostridium sp. ATCC BAA-442 RepID=U2BAD0_9CLOT
Cobalt transport protein {ECO:0000313|EMBL:ERI75099.1}; TaxID=649724 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ATCC BAA-442.;"
cobalt transport protein
L3_114_000M1_scaffold_440_13
[Clostridium] saccharolyticum, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10220..11167)
DNA (948bp) protein (316aa)
Transcriptional regulator, AraC family n=1 Tax=Clostridium cf. saccharolyticum K10 RepID=D6DF11_CLOSC
transcriptional regulator, AraC family
Transcriptional regulator, AraC family {ECO:0000313|EMBL:CBK76285.1}; TaxID=717608 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] cf. saccharolyticum K10.;"
L3_114_000M1_scaffold_440_14
Desulfitobacterium hafniense, Desulfitobacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11195..11974)
DNA (780bp) protein (260aa)
Uncharacterized protein n=1 Tax=Desulfitobacterium hafniense (strain DCB-2 / DSM 10664) RepID=B8FSW0_DESHD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACL21976.1}; TaxID=272564 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfitobacterium.;" source="Desulfitobacterium hafniense (strain DCB-2 / DSM 10664).;"
L3_114_000M1_scaffold_440_15
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11955..13055)
DNA (1101bp) protein (367aa)
Semialdehyde dehydrogenase, NAD binding domain protein n=2 Tax=Clostridiales RepID=B0MG14_9FIRM
Semialdehyde dehydrogenase, NAD binding domain protein {ECO:0000313|EMBL:EDR97034.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
saccharopine dehydrogenase
L3_114_000M1_scaffold_440_16
Anaerostipes caccae, Anaerostipes, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13121..18649)
DNA (5529bp) protein (1843aa)
AMP-binding enzyme n=2 Tax=Clostridiales RepID=B0MG15_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:EDR97035.1}; TaxID=411490 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Anaerostipes.;" source="Anaerostipes caccae DSM 14662.;"
hypothetical protein
L3_114_000M1_scaffold_440_17
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18666..19400)
DNA (735bp) protein (245aa)
grsT; gramicidin S biosynthesis protein GrsT (EC:3.1.2.-)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BK91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84741.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
L3_114_000M1_scaffold_440_18
[Clostridium] papyrosolvens, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(19411..22785)
DNA (3375bp) protein (1125aa)
Amino acid adenylation domain protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=F1TDD9_9CLOT
Amino acid adenylation domain protein {ECO:0000313|EMBL:EGD47577.1}; TaxID=588581 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="[Clostridium] papyrosolvens DSM 2782.;"
irp1; high-molecular-weight protein 2
L3_114_000M1_scaffold_440_19
Tyzzerella nexilis, Tyzzerella, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22772..26077)
DNA (3306bp) protein (1102aa)
Putative acyl carrier protein n=1 Tax=Clostridium nexile DSM 1787 RepID=B6FTN8_9CLOT
Putative acyl carrier protein {ECO:0000313|EMBL:EEA80627.1}; TaxID=500632 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Tyzzerella.;" source="Tyzzerella nexilis DSM 1787.;"
amino acid adenylation domain-containing protein
L3_114_000M1_scaffold_440_20
Peptostreptococcaceae bacterium oral taxon 113, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26070..27338)
DNA (1269bp) protein (423aa)
AMP-binding enzyme n=1 Tax=Peptostreptococcaceae bacterium oral taxon 113 str. W5053 RepID=U2JZR1_9FIRM
AMP-binding enzyme {ECO:0000313|EMBL:ERJ85325.1}; TaxID=1321784 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae.;" source="Peptostreptococcaceae bacterium oral taxon 113 str. W5053.;"
amino acid adenylation domain
L3_114_000M1_scaffold_440_21
Brevibacillus laterosporus, Brevibacillus, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(27331..28881)
DNA (1551bp) protein (517aa)
Salicylate synthase {ECO:0000313|EMBL:CCF13030.1}; EC=5.4.4.2 {ECO:0000313|EMBL:CCF13030.1};; TaxID=1118154 species="Bacteria; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Brevibacillus.;" source="Brevibacillus laterosporus GI-9.;"
salicylate synthase (EC:6.3.2.-)
Salicylate synthase n=1 Tax=Brevibacillus laterosporus GI-9 RepID=H0U6D6_BRELA
L3_114_000M1_scaffold_440_22
Ruminococcus sp. CAG:379, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(28892..29623)
DNA (732bp) protein (244aa)
Predicted thioesterase involved in non-ribosomal peptide biosynthesis n=1 Tax=Ruminococcus sp. CAG:379 RepID=R7A4Q5_9FIRM
Predicted thioesterase involved in non-ribosomal peptide biosynthesis {ECO:0000313|EMBL:CDD53275.1}; TaxID=1262956 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:379.;"
Predicted thioesterase involved in non-ribosomal peptide biosynthesis
L3_114_000M1_scaffold_440_23
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29613..30308)
DNA (696bp) protein (232aa)
Putative uncharacterized protein n=3 Tax=root RepID=H1BK92_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84742.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Phosphopantetheinyl transferase
L3_114_000M1_scaffold_440_24
[Eubacterium] hallii, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30415..30981)
DNA (567bp) protein (189aa)
Uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ESR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG37661.1}; TaxID=411469 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="[Eubacterium] hallii DSM 3353.;"
Accessory gene regulator B.
L3_114_000M1_scaffold_440_25
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30981..31136)
DNA (156bp) protein (52aa)
Uncharacterized protein n=2 Tax=Eubacterium RepID=C0ESR8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84739.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
hypothetical protein
L3_114_000M1_scaffold_440_26
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31235..32545)
DNA (1311bp) protein (437aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BK88_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84738.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
L3_114_000M1_scaffold_440_27
[Ruminococcus] torques, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32538..33272)
DNA (735bp) protein (245aa)
Response regulator of the LytR/AlgR family n=1 Tax=Ruminococcus torques L2-14 RepID=D4M3K2_9FIRM
Response regulator of the LytR/AlgR family
Response regulator of the LytR/AlgR family {ECO:0000313|EMBL:CBL25814.1}; TaxID=657313 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus torques L2-14.;"
L3_114_000M1_scaffold_440_28
Eubacterium sp. 3_1_31, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33359..33598)
DNA (240bp) protein (80aa)
Putative uncharacterized protein n=1 Tax=Eubacterium sp. 3_1_31 RepID=H1BK86_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EHO84736.1}; TaxID=457402 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium sp. 3_1_31.;"
Helix-turn-helix.
L3_114_000M1_scaffold_440_29
Coprococcus comes, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33792..36086)
DNA (2295bp) protein (765aa)
Uncharacterized protein n=1 Tax=Coprococcus comes ATCC 27758 RepID=C0B648_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEG91182.1}; TaxID=470146 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus comes ATCC 27758.;"
hypothetical protein
L3_114_000M1_scaffold_440_30
Coprococcus catus, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36071..36340)
DNA (270bp) protein (90aa)
Putative uncharacterized protein n=1 Tax=Coprococcus catus GD/7 RepID=D4J9D3_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBK80954.1}; TaxID=717962 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus.;" source="Coprococcus catus GD/7.;"
Displaying items 1-30 of 31 in total

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