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L3_114_000M1_scaffold_544

Search features with annotation key words

Displaying items 1-30 of 48 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_544_1
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(171..1958)
DNA (1788bp) protein (596aa)
Dihydroxyacid dehydratase/phosphogluconate dehydratase {ECO:0000313|EMBL:CBL07938.1}; EC=4.2.1.9 {ECO:0000313|EMBL:CBL07938.1};; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
Dihydroxyacid dehydratase/phosphogluconate dehydratase (EC:4.2.1.9)
Dihydroxyacid dehydratase/phosphogluconate dehydratase n=2 Tax=Roseburia intestinalis RepID=D4KM36_9FIRM
L3_114_000M1_scaffold_544_2
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2139..3494)
DNA (1356bp) protein (452aa)
Gluconate transporter n=2 Tax=Roseburia RepID=D4KM35_9FIRM
gluconate transporter
Gluconate permease {ECO:0000313|EMBL:CDA55917.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_544_3
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3720..4424)
DNA (705bp) protein (235aa)
Transcriptional regulator, GntR family n=4 Tax=Roseburia RepID=D4KM34_9FIRM
transcriptional regulator, GntR family
Transcriptional regulator, GntR family {ECO:0000313|EMBL:CBL12485.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_544_4
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4506..7544)
DNA (3039bp) protein (1013aa)
Uncharacterized protein n=2 Tax=Roseburia RepID=C7GBL2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEV00819.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Protein of unknown function (DUF2726).
L3_114_000M1_scaffold_544_5
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7541..8722)
DNA (1182bp) protein (394aa)
ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components (EC:3.6.3.34)
Iron compound ABC transporter ATP-binding protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BRN5_9FIRM
Iron compound ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDA55927.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_544_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8729..9733)
DNA (1005bp) protein (335aa)
Iron chelate uptake ABC transporter, FeCT family, permease protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBL4_9FIRM
Iron chelate uptake ABC transporter, FeCT family, permease protein {ECO:0000313|EMBL:EEV00821.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type Fe3+-siderophore transport system, permease component
L3_114_000M1_scaffold_544_7
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9762..11393)
DNA (1632bp) protein (544aa)
ABC-type Fe3+-hydroxamate transport system, periplasmic component n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KM30_9FIRM
ABC-type Fe3+-hydroxamate transport system, periplasmic component {ECO:0000313|EMBL:CBL07932.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type Fe3+-hydroxamate transport system, periplasmic component
L3_114_000M1_scaffold_544_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11409..13064)
DNA (1656bp) protein (552aa)
Cobalamin biosynthesis protein CbiK Co2+ chelatase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AY06_9FIRM
Cobalamin biosynthesis protein CbiK Co2+ chelatase {ECO:0000313|EMBL:CDA55930.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Cobalamin biosynthesis protein CbiK, Co2+ chelatase
L3_114_000M1_scaffold_544_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13869..15650
DNA (1782bp) protein (594aa)
Cache domain protein n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBL7_9FIRM
Cache domain protein {ECO:0000313|EMBL:EEV00824.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Methyl-accepting chemotaxis protein
L3_114_000M1_scaffold_544_10
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15798..17009)
DNA (1212bp) protein (404aa)
HD-GYP domain n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KM28_9FIRM
HD-GYP domain
HD-GYP domain {ECO:0000313|EMBL:CBL07930.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_11
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17085..17222)
DNA (138bp) protein (46aa)
LysR substrate binding domain n=3 Tax=Roseburia intestinalis RepID=D4KM27_9FIRM
LysR substrate binding domain.
LysR substrate binding domain {ECO:0000313|EMBL:CBL07929.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_12
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17245..17862)
DNA (618bp) protein (206aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6BA46_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CDA55936.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_544_13
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17965..19320)
DNA (1356bp) protein (452aa)
Transporter n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BRP6_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Na+-dependent transporters of the SNF family
L3_114_000M1_scaffold_544_14
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19345..20727)
DNA (1383bp) protein (461aa)
Amino acid carrier protein n=2 Tax=Roseburia intestinalis RepID=D4KYN4_9FIRM
amino acid carrier protein
Amino acid carrier protein {ECO:0000313|EMBL:CBL07926.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_15
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20836..22557)
DNA (1722bp) protein (574aa)
Methyl-accepting chemotaxis protein n=3 Tax=Roseburia RepID=D4KM23_9FIRM
Methyl-accepting chemotaxis protein
Methyl-accepting chemotaxis protein {ECO:0000313|EMBL:CDA55939.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_544_16
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22769..23704)
DNA (936bp) protein (312aa)
ATPase components of various ABC-type transport systems, contain duplicated ATPase n=4 Tax=Roseburia RepID=D4KM21_9FIRM
ATPase components of various ABC-type transport systems, contain duplicated ATPase
ATPase components of various ABC-type transport systems, contain duplicated ATPase {ECO:0000313|EMBL:CBL07923.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_17
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23691..24782)
DNA (1092bp) protein (364aa)
Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain n=4 Tax=Roseburia RepID=D4KM20_9FIRM
oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal domain
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEV00833.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
L3_114_000M1_scaffold_544_18
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24799..25869)
DNA (1071bp) protein (357aa)
ABC transporter, permease protein n=2 Tax=Roseburia RepID=C7GBM7_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEV00834.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_114_000M1_scaffold_544_19
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25871..26806)
DNA (936bp) protein (312aa)
ABC transporter, permease protein n=2 Tax=Roseburia RepID=C7GBM8_9FIRM
ABC transporter, permease protein {ECO:0000313|EMBL:EEV00835.1}; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
ABC-type dipeptide/oligopeptide/nickel transport systems, permease components
L3_114_000M1_scaffold_544_20
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27022..28737)
DNA (1716bp) protein (572aa)
ABC-type oligopeptide transport system, periplasmic component n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KM18_9FIRM
ABC-type oligopeptide transport system, periplasmic component {ECO:0000313|EMBL:CBL07920.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
ABC-type oligopeptide transport system, periplasmic component
L3_114_000M1_scaffold_544_21
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29536..30288)
DNA (753bp) protein (251aa)
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 n=2 Tax=Roseburia intestinalis RepID=D4KM16_9FIRM
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 {ECO:0000313|EMBL:CBL07918.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_22
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30443..31267)
DNA (825bp) protein (275aa)
PP-loop family protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BRQ8_9FIRM
PP-loop family protein {ECO:0000313|EMBL:CDA55947.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
conserved hypothetical protein TIGR00268
L3_114_000M1_scaffold_544_23
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31291..32190)
DNA (900bp) protein (300aa)
Putative uncharacterized protein n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KM15_9FIRM
Protein of unknown function (DUF3298).
Uncharacterized protein {ECO:0000313|EMBL:CBL07917.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_24
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32264..32917)
DNA (654bp) protein (218aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E {ECO:0000313|EMBL:CBL12463.1}; EC=3.1.3.18 {ECO:0000313|EMBL:CBL12463.1};; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E n=3 Tax=Roseburia RepID=D4KYM3_9FIRM
L3_114_000M1_scaffold_544_25
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32974..34002)
DNA (1029bp) protein (343aa)
Predicted oxidoreductases of the aldo/keto reductase family n=3 Tax=Roseburia RepID=D4KM13_9FIRM
Predicted oxidoreductases of the aldo/keto reductase family
Predicted oxidoreductases of the aldo/keto reductase family {ECO:0000313|EMBL:CBL07915.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_544_26
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(34097..36037)
DNA (1941bp) protein (647aa)
Arylsulfatase {ECO:0000313|EMBL:EEV00845.1}; EC=3.1.6.- {ECO:0000313|EMBL:EEV00845.1};; TaxID=536231 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis L1-82.;"
Arylsulfatase n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GBN8_9FIRM
Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily
L3_114_000M1_scaffold_544_27
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36273..36830)
DNA (558bp) protein (186aa)
Putative diguanylate cyclase/response regulator n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6BRR5_9FIRM
Putative diguanylate cyclase/response regulator {ECO:0000313|EMBL:CDA55952.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
response regulator domain-containing protein
L3_114_000M1_scaffold_544_28
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(36848..39367)
DNA (2520bp) protein (840aa)
Signal transduction histidine kinase n=1 Tax=Roseburia intestinalis XB6B4 RepID=D4KYL9_9FIRM
Signal transduction histidine kinase {ECO:0000313|EMBL:CBL12459.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
Signal transduction histidine kinase
L3_114_000M1_scaffold_544_29
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(39639..39872)
DNA (234bp) protein (78aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=R6B4I8_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL12458.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_544_30
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(40152..42365)
DNA (2214bp) protein (738aa)
Beta-glucosidase-related glycosidases (EC:3.2.1.21)
Beta-glucosidase n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6AY25_9FIRM
Beta-glucosidase {ECO:0000313|EMBL:CDA55955.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
Displaying items 1-30 of 48 in total

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