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L3_114_000M1_scaffold_673

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Displaying 30 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_673_1
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3..407
DNA (405bp) protein (135aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2B5_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77886.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_114_000M1_scaffold_673_2
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

404..2035
DNA (1632bp) protein (544aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=V8BQR3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16836.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Predicted unusual protein kinase
L3_114_000M1_scaffold_673_3
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2156..3142)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TWT8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49167.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
PPIC-type PPIASE domain.
L3_114_000M1_scaffold_673_4
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3168..7058)
DNA (3891bp) protein (1297aa)
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
transcription-repair coupling factor (EC:3.6.1.-)
Transcription-repair-coupling factor n=1 Tax=Ruminococcus gnavus CAG:126 RepID=R5TQ34_9FIRM
L3_114_000M1_scaffold_673_5
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7204..7692
DNA (489bp) protein (163aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49170.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_000M1_scaffold_673_6
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7671..7934)
DNA (264bp) protein (88aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B2A6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77877.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
hypothetical protein
L3_114_000M1_scaffold_673_7
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7941..8621)
DNA (681bp) protein (227aa)
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED/haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E (EC:3.1.3.18)
HAD-superfamily hydrolase, subfamily IA family protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2A5_RUMGN
HAD-superfamily hydrolase, subfamily IA family protein {ECO:0000313|EMBL:EDN77876.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
L3_114_000M1_scaffold_673_8
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8745..9524)
DNA (780bp) protein (260aa)
RNA polymerase sigma factor n=2 Tax=Lachnospiraceae RepID=F7JV01_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
RNA polymerase, sigma subunit, RpsG/SigG
L3_114_000M1_scaffold_673_9
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9658..9795)
DNA (138bp) protein (46aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BNZ4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49174.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
L3_114_000M1_scaffold_673_10
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9914..10069)
DNA (156bp) protein (52aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B2A2_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49175.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_000M1_scaffold_673_11
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10190..11800)
DNA (1611bp) protein (537aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B2A1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77872.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L3_114_000M1_scaffold_673_12
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11877..12617)
DNA (741bp) protein (247aa)
RNA polymerase sigma factor n=4 Tax=Clostridiales RepID=A7B2A0_RUMGN
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
RNA polymerase, sigma 29 subunit, SigE
L3_114_000M1_scaffold_673_13
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12583..13404)
DNA (822bp) protein (274aa)
Uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B299_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EDN77870.1}; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
Sporulation factor SpoIIGA.
L3_114_000M1_scaffold_673_14
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13587..14762)
DNA (1176bp) protein (392aa)
Cell division protein FtsZ n=4 Tax=Clostridiales RepID=A7B297_RUMGN
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU000631}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
cell division protein FtsZ
L3_114_000M1_scaffold_673_15
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14903..15766)
DNA (864bp) protein (288aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPV3_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49180.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_000M1_scaffold_673_16
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15793..16878)
DNA (1086bp) protein (362aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=R5TPT6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EGN49181.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Bacterial cell division membrane protein
L3_114_000M1_scaffold_673_17
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(16893..18251)
DNA (1359bp) protein (453aa)
UDP-N-acetylmuramoylalanine--D-glutamate ligase {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084542}; EC=6.3.2.9 {ECO:0000256|HAMAP-Rule:MF_00639, ECO:0000256|SAAS:SAAS00084342};; D-glutamic acid-adding enzyme {ECO:0000256|HAMAP-Rule:MF_00639}; UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase {ECO:0000256|HAMAP-Rule:MF_00639}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
UDP-N-acetylmuramoylalanine--D-glutamate ligase (EC:6.3.2.9)
UDP-N-acetylmuramoylalanine--D-glutamate ligase n=3 Tax=Lachnospiraceae RepID=A7B6P8_RUMGN
L3_114_000M1_scaffold_673_18
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18254..19210)
DNA (957bp) protein (319aa)
Phospho-N-acetylmuramoyl-pentapeptide-transferase {ECO:0000256|HAMAP-Rule:MF_00038}; EC=2.7.8.13 {ECO:0000256|HAMAP-Rule:MF_00038};; UDP-MurNAc-pentapeptide phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00038}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
Phospho-N-acetylmuramoyl-pentapeptide-transferase (EC:2.7.8.13)
Phospho-N-acetylmuramoyl-pentapeptide-transferase n=3 Tax=Lachnospiraceae RepID=A7B6P7_RUMGN
L3_114_000M1_scaffold_673_19
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19266..20981)
DNA (1716bp) protein (572aa)
Penicillin-binding protein, transpeptidase domain protein n=3 Tax=Lachnospiraceae RepID=A7B6P6_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49184.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_114_000M1_scaffold_673_20
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21043..23064)
DNA (2022bp) protein (674aa)
Uncharacterized protein n=2 Tax=Lachnospiraceae RepID=V8BPV8_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49185.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_114_000M1_scaffold_673_21
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23074..23616)
DNA (543bp) protein (181aa)
Uncharacterized protein n=3 Tax=Lachnospiraceae RepID=A7B6P4_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:ETD16856.1}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
hypothetical protein
L3_114_000M1_scaffold_673_22
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23703..24638)
DNA (936bp) protein (312aa)
Ribosomal RNA small subunit methyltransferase H {ECO:0000256|HAMAP-Rule:MF_01007}; EC=2.1.1.199 {ECO:0000256|HAMAP-Rule:MF_01007};; 16S rRNA m(4)C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01007}; rRNA (cytosine-N(4)-)-methyltransferase RsmH {ECO:0000256|HAMAP-Rule:MF_01007}; TaxID=1073375 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus CC55_001C.;"
S-adenosyl-methyltransferase MraW (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase H n=4 Tax=Clostridiales RepID=A7B6P3_RUMGN
L3_114_000M1_scaffold_673_23
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24668..25105)
DNA (438bp) protein (146aa)
Protein MraZ n=4 Tax=Clostridiales RepID=A7B6P2_RUMGN
Transcriptional regulator MraZ {ECO:0000256|HAMAP-Rule:MF_01008, ECO:0000256|SAAS:SAAS00217766}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
mraZ protein
L3_114_000M1_scaffold_673_24
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25316..25552)
DNA (237bp) protein (79aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6P1_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49189.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_000M1_scaffold_673_25
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25632..26471)
DNA (840bp) protein (280aa)
EDD domain protein, DegV family n=4 Tax=Clostridiales RepID=A7B6P0_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49190.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
EDD domain protein, DegV family
L3_114_000M1_scaffold_673_26
Ruminococcus gnavus CAG:126, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26596..27831)
DNA (1236bp) protein (412aa)
Uncharacterized protein n=3 Tax=Clostridiales RepID=V8BQT7_RUMGN
Putative cell division protein FtsW {ECO:0000313|EMBL:CCZ67813.1}; TaxID=1263106 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus gnavus CAG:126.;"
Bacterial cell division membrane protein
L3_114_000M1_scaffold_673_27
[Ruminococcus] gnavus, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27861..29741)
DNA (1881bp) protein (627aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EDN76429.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EDN76429.1};; TaxID=411470 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia.;" source="Ruminococcus gnavus ATCC 29149.;"
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=3 Tax=Lachnospiraceae RepID=A7B6N8_RUMGN
L3_114_000M1_scaffold_673_28
Lachnospiraceae bacterium 2_1_58FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29899..31416)
DNA (1518bp) protein (506aa)
Uncharacterized protein n=4 Tax=Clostridiales RepID=A7B6N7_RUMGN
Uncharacterized protein {ECO:0000313|EMBL:EGN49193.1}; TaxID=658082 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 2_1_58FAA.;"
hypothetical protein
L3_114_000M1_scaffold_673_29
[Clostridium] bolteae, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32162..32476
DNA (315bp) protein (105aa)
Uncharacterized protein n=6 Tax=Clostridiales RepID=U4B4N3_CLODI
putative conjugative transposon protein DUF961family Tn916-like, CTn6-Orf24
Uncharacterized protein {ECO:0000313|EMBL:EDP15495.1}; TaxID=411902 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Clostridium bolteae (strain ATCC BAA-613 / WAL 16351).;"
L3_114_000M1_scaffold_673_30
[Clostridium] clostridioforme, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32498..32596
DNA (99bp) protein (33aa)
Uncharacterized protein n=1 Tax=Clostridium difficile 824 RepID=T3JB55_CLODI
Bacterial protein of unknown function (DUF961).
Conjugative transposon protein {ECO:0000313|EMBL:ENZ19550.1}; TaxID=999408 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] clostridioforme 90A8.;"
Displaying 30 items

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