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L3_114_000M1_scaffold_676

Search features with annotation key words

Displaying 25 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_676_1
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2..418
DNA (417bp) protein (139aa)
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
DNA-directed RNA polymerase subunit beta n=1 Tax=Bifidobacterium breve RepID=UPI0002F3C8AD
DNA-directed RNA polymerase beta chain
L3_114_000M1_scaffold_676_2
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

509..2629
DNA (2121bp) protein (707aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
DNA-directed RNA polymerase subunit beta' n=8 Tax=Bifidobacterium RepID=F6C5Y1_BIFBA
DNA-directed RNA polymerase beta' chain
L3_114_000M1_scaffold_676_3
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

2626..4446
DNA (1821bp) protein (607aa)
DNA-directed RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000256|HAMAP-Rule:MF_01322}; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
DNA-directed RNA polymerase subunit beta' n=8 Tax=Bifidobacterium RepID=F6C5Y1_BIFBA
DNA-directed RNA polymerase beta' chain
L3_114_000M1_scaffold_676_4
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4546..6975)
DNA (2430bp) protein (810aa)
PTransglutaminase-like protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L1M5_BIFBR
putative membrane spanning protein
Transglutaminase-like protein {ECO:0000313|EMBL:ERI87588.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_114_000M1_scaffold_676_5
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6972..8261)
DNA (1290bp) protein (430aa)
Uncharacterized protein n=5 Tax=Bifidobacterium breve RepID=F6C5X9_BIFBA
Hypothetical protein with DUF58 domain
Uncharacterized protein {ECO:0000313|EMBL:AEF26356.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_114_000M1_scaffold_676_6
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(8275..14799)
DNA (6525bp) protein (2175aa)
Putative uncharacterized protein n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y2A0_BIFBU
Fused conserved hypothetical protein with a fibronectin type III domain and MoxR protein
Uncharacterized protein {ECO:0000313|EMBL:ABE95199.1}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
L3_114_000M1_scaffold_676_7
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(14771..15943)
DNA (1173bp) protein (391aa)
Kinase domain protein n=1 Tax=Bifidobacterium breve JCP7499 RepID=U2E0L0_BIFBR
Kinase domain protein {ECO:0000313|EMBL:ERI87582.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Serine/threonine protein kinase
L3_114_000M1_scaffold_676_8
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

16054..20151
DNA (4098bp) protein (1366aa)
ATP-dependent DNA helicase, UvrD/REP family {ECO:0000313|EMBL:ABE95202.1}; EC=3.6.1.- {ECO:0000313|EMBL:ABE95202.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Uncharacterized protein n=1 Tax=Bifidobacterium breve CECT 7263 RepID=H3L1M9_BIFBR
ATP-dependent DNA helicase, UvrD/REP family
L3_114_000M1_scaffold_676_9
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

20148..24083
DNA (3936bp) protein (1312aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=1385940 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCM 7019.;"
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S2ZKA5_BIFBR
ATP-dependent DNA helicase, UvrD/REP family
L3_114_000M1_scaffold_676_10
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

24255..25574
DNA (1320bp) protein (440aa)
Transporter, major facilitator family protein n=5 Tax=Bifidobacterium breve RepID=F6C5X4_BIFBA
putative membrane spanning protein, member of major facilitator superfamily (MFS)
Transporter, major facilitator family protein {ECO:0000313|EMBL:AEF27372.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_114_000M1_scaffold_676_11
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25662..26417
DNA (756bp) protein (252aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
4-hydroxy-tetrahydrodipicolinate reductase n=2 Tax=Bifidobacterium breve RepID=F6C5X3_BIFBA
dapB; Dihydrodipicolinate reductase
L3_114_000M1_scaffold_676_12
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

26538..27428
DNA (891bp) protein (297aa)
dapA2; Dihydrodipicolinate synthase (EC:4.2.1.52)
4-hydroxy-tetrahydrodipicolinate synthase {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421}; Short=HTPA synthase {ECO:0000256|HAMAP-Rule:MF_00418};; EC=4.3.3.7 {ECO:0000256|HAMAP-Rule:MF_00418, ECO:0000256|SAAS:SAAS00086421};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
4-hydroxy-tetrahydrodipicolinate synthase n=3 Tax=Bifidobacterium breve RepID=F9Y2A6_BIFBU
L3_114_000M1_scaffold_676_13
unknown

Not on your lists

comp(27498..27746)
DNA (249bp) protein (83aa)

This feature has no annotations

L3_114_000M1_scaffold_676_14
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

27776..29152
DNA (1377bp) protein (459aa)
Metal-dependent hydrolase (EC:3.-.-.-)
Metal-dependent hydrolase {ECO:0000313|EMBL:ABE95207.1}; EC=3.-.-.- {ECO:0000313|EMBL:ABE95207.1};; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Metal-dependent hydrolase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y2A7_BIFBU
L3_114_000M1_scaffold_676_15
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

29194..31803
DNA (2610bp) protein (870aa)
Aminopeptidase {ECO:0000313|EMBL:BAQ99472.1}; Membrane alanyl aminopeptidase {ECO:0000313|EMBL:EFE89002.1}; EC=3.4.11.2 {ECO:0000313|EMBL:EFE89002.1};; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
Membrane alanyl aminopeptidase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BMW5_BIFBR
pepN; Alanine aminopeptidase
L3_114_000M1_scaffold_676_16
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32251..32703
DNA (453bp) protein (151aa)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
Phosphoglucosamine mutase n=1 Tax=Bifidobacterium breve DSM 20213 = JCM 1192 RepID=D4BMW7_BIFBR
mrsA; Phosphoglucosamine mutase
L3_114_000M1_scaffold_676_17
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

32741..33556
DNA (816bp) protein (272aa)
glmM; phosphoglucosamine mutase (EC:5.4.2.10)
Phosphoglucosamine mutase {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078319}; EC=5.4.2.10 {ECO:0000256|HAMAP-Rule:MF_01554, ECO:0000256|SAAS:SAAS00078300};; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Phosphoglucosamine mutase n=2 Tax=Bifidobacterium breve RepID=F6C5W9_BIFBA
L3_114_000M1_scaffold_676_18
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

33700..34353
DNA (654bp) protein (218aa)
Peptide deformylase (EC:3.5.1.88)
Peptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|RuleBase:RU003335}; Short=PDF {ECO:0000256|HAMAP-Rule:MF_00163};; EC=3.5.1.88 {ECO:0000256|HAMAP-Rule:MF_00163, ECO:0000256|SAAS:SAAS00013131};; Polypeptide deformylase {ECO:0000256|HAMAP-Rule:MF_00163}; TaxID=326426 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain NCIMB 8807 / UCC2003).;"
Peptide deformylase n=1 Tax=Bifidobacterium breve (strain NCIMB 8807 / UCC2003) RepID=F9Y2B0_BIFBU
L3_114_000M1_scaffold_676_19
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

34350..35804
DNA (1455bp) protein (485aa)
Uncharacterized protein n=1 Tax=Bifidobacterium breve HPH0326 RepID=S3AKG0_BIFBR
Hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EPD76829.1}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_114_000M1_scaffold_676_20
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

36156..37280
DNA (1125bp) protein (375aa)
Peptide chain release factor 2 n=5 Tax=Bifidobacterium breve RepID=F6C5W5_BIFBA
Bacterial Peptide Chain Release Factor 2 (RF-2)
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
L3_114_000M1_scaffold_676_21
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

37283..38479
DNA (1197bp) protein (399aa)
Cell division ATP-binding protein FtsE n=4 Tax=Bifidobacterium breve RepID=F6C5W4_BIFBA
ftsE; Cell division ATP-binding protein ftsE
Cell division ATP-binding protein FtsE {ECO:0000313|EMBL:ERI87568.1}; TaxID=1261072 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve JCP7499.;"
L3_114_000M1_scaffold_676_22
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

38483..39406
DNA (924bp) protein (308aa)
Cell division protein FtsX n=6 Tax=Bifidobacterium breve RepID=F6C5W3_BIFBA
Cell division protein ftsX
Cell division protein FtsX {ECO:0000256|PIRNR:PIRNR003097}; TaxID=1385941 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve NCFB 2258.;"
L3_114_000M1_scaffold_676_23
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

39485..40831
DNA (1347bp) protein (449aa)
CHAP domain protein n=4 Tax=Bifidobacterium breve RepID=F6C5W2_BIFBA
putative secreted protein with CHAP domain
CHAP domain protein {ECO:0000313|EMBL:EFE89011.1}; TaxID=518634 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve DSM 20213 = JCM 1192.;"
L3_114_000M1_scaffold_676_24
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

40945..41421
DNA (477bp) protein (159aa)
SsrA-binding protein n=5 Tax=Bifidobacterium breve RepID=F6C5W1_BIFBA
SsrA-binding protein
SsrA-binding protein {ECO:0000256|HAMAP-Rule:MF_00023, ECO:0000256|SAAS:SAAS00023472}; TaxID=1203540 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve HPH0326.;"
L3_114_000M1_scaffold_676_25
Bifidobacterium breve, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

41543..41839
DNA (297bp) protein (99aa)
ABC transporter, substrate-binding protein, family 3 n=1 Tax=Bifidobacterium breve (strain ACS-071-V-Sch8b) RepID=F6C5W0_BIFBA
Solute-binding protein of ABC transporter system
ABC transporter, substrate-binding protein, family 3 {ECO:0000313|EMBL:AEF27679.1}; TaxID=866777 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium breve (strain ACS-071-V-Sch8b).;"
Displaying 25 items

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