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L3_114_000M1_scaffold_758

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_758_1
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(1..918)
DNA (918bp) protein (306aa)
CTP synthase {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037303}; EC=6.3.4.2 {ECO:0000256|HAMAP-Rule:MF_01227, ECO:0000256|SAAS:SAAS00037401};; CTP synthetase {ECO:0000256|HAMAP-Rule:MF_01227}; UTP--ammonia ligase {ECO:0000256|HAMAP-Rule:MF_01227}; TaxID=537937 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis CCUG 52486.;"
CTP synthase n=2 Tax=Bifidobacterium longum subsp. infantis (strain ATCC 15697 / DSM 20088 / JCM 1222 / NCTC 11817 / S12) RepID=B7GS94_BIFLS
CTP synthase
L3_114_000M1_scaffold_758_2
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(965..2521)
DNA (1557bp) protein (519aa)
Putative peptidase n=1 Tax=Bifidobacterium longum subsp. infantis (strain 157F) RepID=E8MT29_BIFL1
peptidase
Putative peptidase {ECO:0000313|EMBL:BAJ70923.1}; TaxID=565040 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. infantis (strain 157F).;"
L3_114_000M1_scaffold_758_3
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(2588..2977)
DNA (390bp) protein (130aa)
3-dehydroquinate dehydratase {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752}; Short=3-dehydroquinase {ECO:0000256|HAMAP-Rule:MF_00169};; EC=4.2.1.10 {ECO:0000256|HAMAP-Rule:MF_00169, ECO:0000256|SAAS:SAAS00027752};; Type II DHQase {ECO:0000256|HAMAP-Rule:MF_00169}; TaxID=1205679 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum CECT 7347.;"
3-dehydroquinate dehydratase (EC:4.2.1.10)
3-dehydroquinate dehydratase n=4 Tax=Bifidobacterium RepID=C2GTK2_BIFLN
L3_114_000M1_scaffold_758_4
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(3141..4763)
DNA (1623bp) protein (541aa)
Shikimate kinase/3-dehydroquinate synthase n=1 Tax=Bifidobacterium longum CAG:69 RepID=R5MWW8_9BIFI
shikimate kinase/3-dehydroquinate synthase
Shikimate kinase/3-dehydroquinate synthase {ECO:0000313|EMBL:CCY95928.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_114_000M1_scaffold_758_5
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(4846..6033)
DNA (1188bp) protein (396aa)
Chorismate synthase {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605}; Short=CS {ECO:0000256|HAMAP-Rule:MF_00300};; EC=4.2.3.5 {ECO:0000256|HAMAP-Rule:MF_00300, ECO:0000256|RuleBase:RU000605};; 5-enolpyruvylshikimate-3-phosphate phospholyase {ECO:0000256|HAMAP-Rule:MF_00300}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Chorismate synthase n=14 Tax=Bifidobacterium RepID=AROC_BIFLD
chorismate synthase
L3_114_000M1_scaffold_758_6
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

6097..6564
DNA (468bp) protein (156aa)
Uncharacterized protein n=12 Tax=Bifidobacterium RepID=C2GTK5_BIFLN
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95926.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_114_000M1_scaffold_758_7
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(6632..7813)
DNA (1182bp) protein (394aa)
Aminodeoxychorismate lyase n=11 Tax=Bifidobacterium longum RepID=B3DSE1_BIFLD
aminodeoxychorismate lyase
YceG family protein {ECO:0000313|EMBL:EIJ24486.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_114_000M1_scaffold_758_8
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(7824..8282)
DNA (459bp) protein (153aa)
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=216816 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum.;"
Putative Holliday junction resolvase n=8 Tax=Bifidobacterium RepID=RUVX_BIFLD
endonuclease for recombination
L3_114_000M1_scaffold_758_9
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(8291..10972)
DNA (2682bp) protein (894aa)
Alanine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015689}; EC=6.1.1.7 {ECO:0000256|HAMAP-Rule:MF_00036, ECO:0000256|SAAS:SAAS00015673};; Alanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00036}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Alanine--tRNA ligase n=11 Tax=Bifidobacterium RepID=SYA_BIFLO
alanyl-tRNA synthase
L3_114_000M1_scaffold_758_10
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11100..11336)
DNA (237bp) protein (79aa)
Uncharacterized protein n=16 Tax=Bifidobacterium RepID=B3DSE4_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACD98063.1}; TaxID=205913 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum (strain DJO10A).;"
L3_114_000M1_scaffold_758_11
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11336..11734)
DNA (399bp) protein (133aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=B3DSE5_BIFLD
hypothetical protein
PF06103 family protein {ECO:0000313|EMBL:EIJ24477.1}; TaxID=1161904 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 35B.;"
L3_114_000M1_scaffold_758_12
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(11937..12665)
DNA (729bp) protein (243aa)
Uncharacterized protein n=18 Tax=Bifidobacterium RepID=Q8G5W7_BIFLO
hypothetical protein
Phosphoglycerate mutase family protein {ECO:0000313|EMBL:EEI81418.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_114_000M1_scaffold_758_13
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12784..14748
DNA (1965bp) protein (655aa)
Acyltransferase n=13 Tax=Bifidobacterium longum RepID=C2GTL2_BIFLN
hypothetical protein
Acyltransferase {ECO:0000313|EMBL:EIJ28462.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_114_000M1_scaffold_758_14
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists


comp(14839..15465)
DNA (627bp) protein (209aa)
30S ribosomal protein S4 n=20 Tax=Bifidobacterium RepID=RS4_BIFLD
30S ribosomal protein S4
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306}; TaxID=1035817 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum KACC 91563.;"
L3_114_000M1_scaffold_758_15
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(15664..16632)
DNA (969bp) protein (323aa)
ABC transporter ATP-binding protein n=8 Tax=Bifidobacterium longum RepID=F8AQU3_BIFLN
ABC transporter ATP-binding protein
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EIJ28429.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_114_000M1_scaffold_758_16
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(16634..17851)
DNA (1218bp) protein (406aa)
ABC transporter permease n=8 Tax=Bifidobacterium longum RepID=F8AQU4_BIFLN
ABC transporter permease
Efflux ABC transporter, permease protein {ECO:0000313|EMBL:EEI81422.1}; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
L3_114_000M1_scaffold_758_17
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(17942..18340)
DNA (399bp) protein (133aa)
Uncharacterized protein n=17 Tax=Bifidobacterium RepID=B3DSF3_BIFLD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:KEY32823.1}; TaxID=1457186 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum EK13.;"
L3_114_000M1_scaffold_758_18
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(18485..21217)
DNA (2733bp) protein (911aa)
DNA helicase {ECO:0000256|SAAS:SAAS00145970}; EC=3.6.4.12 {ECO:0000256|SAAS:SAAS00145970};; TaxID=548480 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum ATCC 55813.;"
Putative ATP-dependent DNA helicase PcrA n=1 Tax=Bifidobacterium longum subsp. longum ATCC 55813 RepID=C2GTL7_BIFLN
uvrD2; uvrd2
L3_114_000M1_scaffold_758_19
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21304..21885
DNA (582bp) protein (194aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
Xanthine phosphoribosyltransferase n=17 Tax=Bifidobacterium RepID=XPT_BIFLD
apt2; apt2
L3_114_000M1_scaffold_758_20
Bifidobacterium sp. 12_1_47BFAA, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

21936..23300
DNA (1365bp) protein (455aa)
Xanthine/uracil permease n=2 Tax=Bifidobacterium RepID=B3DSF6_BIFLD
uraA1; Xanthine/uracil permease
Xanthine permease {ECO:0000313|EMBL:EFV37765.1}; TaxID=469594 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium sp. 12_1_47BFAA.;"
L3_114_000M1_scaffold_758_21
Bifidobacterium longum CAG:69, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23430..23639)
DNA (210bp) protein (70aa)
Transcriptional regulator n=20 Tax=Bifidobacterium RepID=D6D8X5_BIFLN
DNA-binding helix-turn-helix protein
Uncharacterized protein {ECO:0000313|EMBL:CCY95911.1}; TaxID=1263059 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium; environmental samples.;" source="Bifidobacterium longum CAG:69.;"
L3_114_000M1_scaffold_758_22
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(23646..23906)
DNA (261bp) protein (87aa)
Uncharacterized protein n=8 Tax=Bifidobacterium longum RepID=B3DSF8_BIFLD
Protein of unknown function (DUF3036).
Uncharacterized protein {ECO:0000313|EMBL:KEY22096.1}; TaxID=1350473 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 17-1B.;"
L3_114_000M1_scaffold_758_23
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(24060..24881)
DNA (822bp) protein (274aa)
Uncharacterized protein n=7 Tax=Bifidobacterium longum RepID=Q8G5V8_BIFLO
hypothetical protein
TAP-like protein {ECO:0000313|EMBL:EIJ28459.1}; TaxID=1161743 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum 44B.;"
L3_114_000M1_scaffold_758_24
Bifidobacterium longum, Bifidobacterium, Bifidobacteriales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

25169..26107
DNA (939bp) protein (313aa)
Co/Zn/Cd efflux system component n=10 Tax=Bifidobacterium longum RepID=B3DSG0_BIFLD
czcD2; czcd2
Cobalt transporter {ECO:0000313|EMBL:AIW43670.1}; TaxID=1300227 species="Bacteria; Actinobacteria; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium.;" source="Bifidobacterium longum subsp. longum GT15.;"
Displaying 24 items

View Taxonomy