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L3_114_000M1_scaffold_860

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Displaying items 1-30 of 33 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_860_1
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

152..619
DNA (468bp) protein (156aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CNZ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32898.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_860_2
Ruminococcus sp. CAG:55, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1057..1341
DNA (285bp) protein (95aa)
Putative efflux protein MATE family n=1 Tax=Ruminococcus sp. CAG:55 RepID=R6Q1U0_9FIRM
Putative efflux protein MATE family {ECO:0000313|EMBL:CDC15937.1}; TaxID=1262960 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:55.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_860_3
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(1455..2834)
DNA (1380bp) protein (460aa)
Pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNY6_9FIRM
Pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EDY32892.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Uncharacterized FAD-dependent dehydrogenases
L3_114_000M1_scaffold_860_4
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2877..4097)
DNA (1221bp) protein (407aa)
Sporulation integral membrane protein YtvI n=2 Tax=Ruminococcus lactaris RepID=B5CNY5_9FIRM
Sporulation integral membrane protein YtvI {ECO:0000313|EMBL:ETD17835.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
sporulation integral membrane protein YtvI
L3_114_000M1_scaffold_860_5
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4100..4702)
DNA (603bp) protein (201aa)
Ribosome biogenesis GTP-binding protein YsxC n=2 Tax=Ruminococcus lactaris RepID=V8BRU1_9FIRM
Probable GTP-binding protein EngB {ECO:0000256|HAMAP-Rule:MF_00321}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ribosome biogenesis GTP-binding protein YsxC/EngB
L3_114_000M1_scaffold_860_6
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4714..7032)
DNA (2319bp) protein (773aa)
Lon protease {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174}; EC=3.4.21.53 {ECO:0000256|HAMAP-Rule:MF_01973, ECO:0000256|PIRNR:PIRNR001174};; ATP-dependent protease La {ECO:0000256|HAMAP-Rule:MF_01973}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATP-dependent protease La (EC:3.4.21.53)
Lon protease n=2 Tax=Ruminococcus lactaris RepID=B5CNY3_9FIRM
L3_114_000M1_scaffold_860_7
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7150..8421)
DNA (1272bp) protein (424aa)
ATP-dependent Clp protease ATP-binding subunit ClpX n=2 Tax=Ruminococcus lactaris RepID=B5CNY2_9FIRM
ATP-dependent Clp protease ATP-binding subunit ClpX {ECO:0000256|HAMAP-Rule:MF_00175, ECO:0000256|SAAS:SAAS00063387}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
endopeptidase Clp ATP-binding regulatory subunit (clpX)
L3_114_000M1_scaffold_860_8
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8449..9030)
DNA (582bp) protein (194aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU000549};; Endopeptidase Clp {ECO:0000256|HAMAP-Rule:MF_00444}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
ATP-dependent Clp protease, proteolytic subunit ClpP (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNY1_9FIRM
L3_114_000M1_scaffold_860_9
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9157..10446)
DNA (1290bp) protein (430aa)
Trigger factor {ECO:0000256|HAMAP-Rule:MF_00303, ECO:0000256|RuleBase:RU003914}; Short=TF {ECO:0000256|HAMAP-Rule:MF_00303};; EC=5.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00303};; PPIase {ECO:0000256|HAMAP-Rule:MF_00303}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Trigger factor n=2 Tax=Ruminococcus lactaris RepID=B5CNY0_9FIRM
trigger factor
L3_114_000M1_scaffold_860_10
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10564..11106)
DNA (543bp) protein (181aa)
DJ-1 family protein n=2 Tax=Ruminococcus lactaris RepID=B5CNX9_9FIRM
DJ-1 family protein {ECO:0000313|EMBL:EDY32885.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
DJ-1 family protein
L3_114_000M1_scaffold_860_11
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11261..11782
DNA (522bp) protein (174aa)
Adenylate cyclase n=2 Tax=Ruminococcus lactaris RepID=B5CNX8_9FIRM
Adenylate cyclase {ECO:0000313|EMBL:EDY32884.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
adenylate cyclase
L3_114_000M1_scaffold_860_12
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11921..12295
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BSQ5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17827.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
Helix-turn-helix.
L3_114_000M1_scaffold_860_13
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12452..13669)
DNA (1218bp) protein (406aa)
Homoserine dehydrogenase {ECO:0000256|RuleBase:RU000579}; EC=1.1.1.3 {ECO:0000256|RuleBase:RU000579};; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
homoserine dehydrogenase (EC:1.1.1.3)
Homoserine dehydrogenase n=2 Tax=Ruminococcus lactaris RepID=B5CNX6_9FIRM
L3_114_000M1_scaffold_860_14
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13666..14685)
DNA (1020bp) protein (340aa)
Peptide chain release factor 2 n=2 Tax=Ruminococcus lactaris RepID=B5CNX5_9FIRM
Peptide chain release factor 2 {ECO:0000256|SAAS:SAAS00090452}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
bacterial peptide chain release factor 2 (bRF-2)
L3_114_000M1_scaffold_860_15
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14717..14812)
DNA (96bp) protein (32aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17824.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_860_16
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14842..17418)
DNA (2577bp) protein (859aa)
Protein translocase subunit SecA n=2 Tax=Ruminococcus lactaris RepID=B5CNX4_9FIRM
Protein translocase subunit SecA {ECO:0000256|HAMAP-Rule:MF_01382, ECO:0000256|RuleBase:RU003874}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
protein translocase subunit secA
L3_114_000M1_scaffold_860_17
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17541..18308)
DNA (768bp) protein (256aa)
phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type (EC:5.3.1.16)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BSQ1_9FIRM
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase {ECO:0000313|EMBL:ETD17822.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_860_18
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18404..18763)
DNA (360bp) protein (120aa)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=B5CNX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EDY32878.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_860_19
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18933..19772)
DNA (840bp) protein (280aa)
RNA polymerase sigma factor n=2 Tax=Ruminococcus lactaris RepID=B5CNX1_9FIRM
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000715}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
RNA polymerase, sigma 70 subunit, RpoD
L3_114_000M1_scaffold_860_20
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(19785..20138)
DNA (354bp) protein (118aa)
hypothetical protein (EC:3.1.3.11)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BRS5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17819.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_860_21
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20151..20312)
DNA (162bp) protein (54aa)
hypothetical protein (EC:3.1.3.11)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8BRJ7_9FIRM
Putative Fructose-1,6-bisphosphatase class 3 2 {ECO:0000313|EMBL:EDY32874.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_860_22
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20381..21139)
DNA (759bp) protein (253aa)
4-hydroxy-tetrahydrodipicolinate reductase {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018068}; Short=HTPA reductase {ECO:0000256|HAMAP-Rule:MF_00102};; EC=1.17.1.8 {ECO:0000256|HAMAP-Rule:MF_00102, ECO:0000256|SAAS:SAAS00018030};; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
dihydrodipicolinate reductase (EC:1.3.1.26)
4-hydroxy-tetrahydrodipicolinate reductase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNW7_9FIRM
L3_114_000M1_scaffold_860_23
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(21316..21948)
DNA (633bp) protein (211aa)
Single-strand binding family protein n=2 Tax=Ruminococcus lactaris RepID=B5CNW6_9FIRM
Single-strand binding family protein {ECO:0000313|EMBL:EDY32872.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Single-stranded DNA-binding protein
L3_114_000M1_scaffold_860_24
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(22178..26209)
DNA (4032bp) protein (1344aa)
Repeat protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNW5_9FIRM
Repeat protein {ECO:0000313|EMBL:EDY32871.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
hypothetical protein
L3_114_000M1_scaffold_860_25
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26560..28389
DNA (1830bp) protein (610aa)
GTP-binding protein TypA n=2 Tax=Ruminococcus lactaris RepID=B5CNW4_9FIRM
GTP-binding protein TypA/BipA {ECO:0000313|EMBL:ETD17813.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
GTP-binding protein TypA/BipA
L3_114_000M1_scaffold_860_26
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28585..29145
DNA (561bp) protein (187aa)
Ribosomal subunit interface protein n=2 Tax=Ruminococcus lactaris RepID=B5CNW3_9FIRM
Ribosomal subunit interface protein {ECO:0000313|EMBL:ETD17812.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
ribosomal subunit interface protein
L3_114_000M1_scaffold_860_27
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29322..29987)
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Ruminococcus lactaris CC59_002D RepID=V8BTJ2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17811.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
conserved hypothetical protein TIGR00257
L3_114_000M1_scaffold_860_28
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30164..32662
DNA (2499bp) protein (833aa)
penicillin-binding protein, 1A family (EC:2.4.1.- 3.4.-.-)
Uncharacterized protein n=2 Tax=Ruminococcus lactaris RepID=V8BSM7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:ETD17810.1}; TaxID=1073376 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris CC59_002D.;"
L3_114_000M1_scaffold_860_29
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32768..33703)
DNA (936bp) protein (312aa)
glucokinase (EC:2.7.1.2)
ROK family protein n=2 Tax=Ruminococcus lactaris RepID=B5CNW0_9FIRM
ROK family protein {ECO:0000313|EMBL:EDY32866.1}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
L3_114_000M1_scaffold_860_30
Ruminococcus lactaris, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(33765..34694)
DNA (930bp) protein (310aa)
HPr kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058411}; Short=HPrK/P {ECO:0000256|HAMAP-Rule:MF_01249};; EC=2.7.11.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058427};; EC=2.7.4.- {ECO:0000256|HAMAP-Rule:MF_01249, ECO:0000256|SAAS:SAAS00058435};; HPr(Ser) kinase/phosphorylase {ECO:0000256|HAMAP-Rule:MF_01249}; TaxID=471875 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus lactaris ATCC 29176.;"
Hpr(Ser) kinase/phosphatase (EC:2.7.1.- 2.7.4.- 2.7.11.-)
HPr kinase/phosphorylase n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CNV9_9FIRM
Displaying items 1-30 of 33 in total

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