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L3_114_000M1_scaffold_197

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Displaying items 1-30 of 43 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_197_1
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

207..980
DNA (774bp) protein (258aa)
HAD-superfamily hydrolase subfamily IIB n=2 Tax=root RepID=R6EJP3_9FIRM
HAD-superfamily hydrolase subfamily IIB {ECO:0000313|EMBL:CDB00085.1}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
HAD-superfamily hydrolase, subfamily IIB
L3_114_000M1_scaffold_197_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1165..1425
DNA (261bp) protein (87aa)
ptsH1; Phosphocarrier protein HPr (EC:2.7.11.-)
Phosphocarrier, HPr family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP20_9FIRM
Phosphocarrier, HPr family {ECO:0000313|EMBL:EFB75516.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1500..3179
DNA (1680bp) protein (560aa)
Phosphoenolpyruvate-protein phosphotransferase {ECO:0000256|PIRNR:PIRNR000732}; EC=2.7.3.9 {ECO:0000256|PIRNR:PIRNR000732};; Phosphotransferase system, enzyme I {ECO:0000256|PIRNR:PIRNR000732}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
phosphoenolpyruvate--protein phosphotransferase (EC:2.7.3.9)
Phosphoenolpyruvate-protein phosphotransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP19_9FIRM
L3_114_000M1_scaffold_197_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3404..5458)
DNA (2055bp) protein (685aa)
ATPase, AAA family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP18_9FIRM
ATPase, AAA family {ECO:0000313|EMBL:EFB75514.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases of the AAA+ class
L3_114_000M1_scaffold_197_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5455..6630)
DNA (1176bp) protein (392aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP17_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75513.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6630..8063)
DNA (1434bp) protein (478aa)
Radical SAM domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP16_9FIRM
Radical SAM domain protein {ECO:0000313|EMBL:EFB75512.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
radical SAM domain-containing protein
L3_114_000M1_scaffold_197_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8430..9314)
DNA (885bp) protein (295aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP15_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75511.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_197_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9330..10943)
DNA (1614bp) protein (538aa)
Peptide chain release factor 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP14_9FIRM
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
bacterial peptide chain release factor 3 (bRF-3)
L3_114_000M1_scaffold_197_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11297..12007
DNA (711bp) protein (237aa)
Peptidase, M23 family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP12_9FIRM
Peptidase, M23 family {ECO:0000313|EMBL:EFB75508.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Membrane proteins related to metalloendopeptidases
L3_114_000M1_scaffold_197_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(12218..14080)
DNA (1863bp) protein (621aa)
Cadmium-exporting ATPase {ECO:0000313|EMBL:EFB75507.1}; EC=3.6.3.3 {ECO:0000313|EMBL:EFB75507.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heavy metal-(Cd/Co/Hg/Pb/Zn)-translocating P-type ATPase (EC:3.6.3.5)
Cadmium-exporting ATPase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP11_9FIRM
L3_114_000M1_scaffold_197_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14147..14362)
DNA (216bp) protein (72aa)
Heavy metal-associated domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP10_9FIRM
Heavy metal-associated domain protein {ECO:0000313|EMBL:EFB75506.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
heavy metal associated domain-containing protein
L3_114_000M1_scaffold_197_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14451..14825)
DNA (375bp) protein (125aa)
Transcriptional regulator, ArsR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP09_9FIRM
Transcriptional regulator, ArsR family {ECO:0000313|EMBL:EFB75505.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, ArsR family
L3_114_000M1_scaffold_197_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14941..15294)
DNA (354bp) protein (118aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP08_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75504.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(15513..16841)
DNA (1329bp) protein (443aa)
Putative permease n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP07_9FIRM
Putative permease {ECO:0000313|EMBL:EFB75503.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
uracil-xanthine permease
L3_114_000M1_scaffold_197_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17090..17485
DNA (396bp) protein (132aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP05_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75502.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Thioesterase superfamily
L3_114_000M1_scaffold_197_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(17752..17955)
DNA (204bp) protein (68aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75500.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18062..19066
DNA (1005bp) protein (335aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75499.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_197_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19185..20549
DNA (1365bp) protein (455aa)
MATE efflux family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIQ2_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EFB77411.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_197_19
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20695..21546)
DNA (852bp) protein (284aa)
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis n=1 Tax=Faecalibacterium prausnitzii SL3/3 RepID=D4K937_9FIRM
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis
Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis {ECO:0000313|EMBL:CBL01350.1}; TaxID=657322 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii SL3/3.;"
L3_114_000M1_scaffold_197_20
Faecalibacterium sp. CAG:74, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21551..22675)
DNA (1125bp) protein (375aa)
Penicillin V acylase-like amidase n=1 Tax=Faecalibacterium sp. CAG:74 RepID=R7I460_9FIRM
Penicillin V acylase-like amidase {ECO:0000313|EMBL:CDE46674.1}; TaxID=1262897 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:74.;"
Penicillin V acylase-like amidase
L3_114_000M1_scaffold_197_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23032..24483
DNA (1452bp) protein (484aa)
Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain (EC:1.3.1.74 3.4.21.-)
Trypsin n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRL4_9FIRM
Trypsin {ECO:0000313|EMBL:EFB74661.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(24681..25037)
DNA (357bp) protein (119aa)
Stage V sporulation protein AE n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV2_9FIRM
Stage V sporulation protein AE {ECO:0000313|EMBL:EFB76400.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage V sporulation protein AE
L3_114_000M1_scaffold_197_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(25034..26050)
DNA (1017bp) protein (339aa)
Stage V sporulation protein AD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV3_9FIRM
Stage V sporulation protein AD {ECO:0000313|EMBL:EFB76401.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Stage V sporulation protein AD (SpoVAD).
L3_114_000M1_scaffold_197_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26054..26497)
DNA (444bp) protein (148aa)
Putative stage V sporulation protein AC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV4_9FIRM
Putative stage V sporulation protein AC {ECO:0000313|EMBL:EFB76402.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage V sporulation protein AC
L3_114_000M1_scaffold_197_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(26533..27102)
DNA (570bp) protein (190aa)
Acetyltransferase, GNAT family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV5_9FIRM
Acetyltransferase, GNAT family {ECO:0000313|EMBL:EFB76403.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_197_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27361..28281
DNA (921bp) protein (307aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189468};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
[LSU ribosomal protein L11P]-lysine N-methyltransferase (EC:2.1.1.-)
Ribosomal protein L11 methyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV6_9FIRM
L3_114_000M1_scaffold_197_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28285..29013
DNA (729bp) protein (243aa)
Ribosomal RNA small subunit methyltransferase E {ECO:0000256|PIRNR:PIRNR015601}; EC=2.1.1.193 {ECO:0000256|PIRNR:PIRNR015601};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA methyltransferase, RsmE family (EC:2.1.1.-)
Ribosomal RNA small subunit methyltransferase E n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV7_9FIRM
L3_114_000M1_scaffold_197_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(29507..30535)
DNA (1029bp) protein (343aa)
Putative A/G-specific adenine glycosylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU8_9FIRM
Putative A/G-specific adenine glycosylase {ECO:0000313|EMBL:EFB76396.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
MutY; A/G-specific DNA glycosylase
L3_114_000M1_scaffold_197_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(30535..31920)
DNA (1386bp) protein (462aa)
Asparagine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453}; EC=6.1.1.22 {ECO:0000256|HAMAP-Rule:MF_00534, ECO:0000256|SAAS:SAAS00089453};; Asparaginyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00534}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
asparaginyl-tRNA synthetase (EC:6.1.1.22)
Asparagine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLU9_9FIRM
L3_114_000M1_scaffold_197_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32285..33415)
DNA (1131bp) protein (377aa)
Stage II sporulation protein P n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLV0_9FIRM
Stage II sporulation protein P {ECO:0000313|EMBL:EFB76398.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage II sporulation protein P
Displaying items 1-30 of 43 in total

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