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L3_114_000M1_scaffold_207

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_207_1
Eubacterium ramulus, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(274..480)
DNA (207bp) protein (69aa)
DNA-binding helix-turn-helix protein n=1 Tax=Eubacterium ramulus ATCC 29099 RepID=U2QY14_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:ERK43627.1}; TaxID=1256908 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium ramulus ATCC 29099.;"
hypothetical protein
L3_114_000M1_scaffold_207_2
unknown

Not on your lists

628..1548
DNA (921bp) protein (307aa)

This feature has no annotations

L3_114_000M1_scaffold_207_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1977..3341
DNA (1365bp) protein (455aa)
Magnesium transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM2_9FIRM
Magnesium transporter MgtE {ECO:0000256|RuleBase:RU362011}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Mg2+ transporter (mgtE)
L3_114_000M1_scaffold_207_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

3637..5406
DNA (1770bp) protein (590aa)
1,4-alpha-glucan branching enzyme {ECO:0000256|SAAS:SAAS00046836}; EC=2.4.1.18 {ECO:0000256|SAAS:SAAS00046836};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase (EC:2.4.1.18)
1,4-alpha-glucan branching enzyme n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNM1_9FIRM
L3_114_000M1_scaffold_207_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5877..7334)
DNA (1458bp) protein (486aa)
UDP-N-acetylmuramyl-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00085409}; EC=6.3.2.- {ECO:0000256|HAMAP-Rule:MF_00208, ECO:0000256|SAAS:SAAS00276926};; UDP-MurNAc-tripeptide synthetase {ECO:0000256|HAMAP-Rule:MF_00208}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-N-acetylmuramyl-tripeptide synthetases (EC:6.3.2.13)
UDP-N-acetylmuramyl-tripeptide synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW5_9FIRM
L3_114_000M1_scaffold_207_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7341..9158)
DNA (1818bp) protein (606aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EFB77475.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EFB77475.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
asparagine synthase (glutamine-hydrolyzing) (EC:6.3.5.4)
Asparagine synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW6_9FIRM
L3_114_000M1_scaffold_207_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9281..10465
DNA (1185bp) protein (395aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW7_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB77476.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA-binding protein
L3_114_000M1_scaffold_207_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10868..12049
DNA (1182bp) protein (394aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77477.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATP-grasp protein-like protein
L3_114_000M1_scaffold_207_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12416..14263
DNA (1848bp) protein (616aa)
Asparagine synthase (Glutamine-hydrolyzing) {ECO:0000313|EMBL:EFB77478.1}; EC=6.3.5.4 {ECO:0000313|EMBL:EFB77478.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Asparagine synthetase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW9_9FIRM
asparagine synthase
L3_114_000M1_scaffold_207_10
unknown

Not on your lists

14713..14940
DNA (228bp) protein (76aa)

This feature has no annotations

L3_114_000M1_scaffold_207_11
Holdemanella biformis, Holdemanella, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

Not on your lists

15178..17328
DNA (2151bp) protein (717aa)
amino acid-binding domain sensor hybrid histidine kinase (EC:2.7.13.3)
Response regulator receiver domain protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CCQ4_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEC89451.1}; TaxID=518637 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Holdemanella.;" source="Holdemanella biformis DSM 3989.;"
L3_114_000M1_scaffold_207_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17452..17760
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77479.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_207_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

18012..19127
DNA (1116bp) protein (372aa)
DegT/DnrJ/EryC1/StrS family aminotransferase (EC:2.6.1.-)
DegT/DnrJ/EryC1/StrS aminotransferase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX1_9FIRM
DegT/DnrJ/EryC1/StrS aminotransferase family protein {ECO:0000313|EMBL:EFB77480.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_207_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19131..20018
DNA (888bp) protein (296aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77481.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77481.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX2_9FIRM
glycosyl transferase family protein
L3_114_000M1_scaffold_207_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20080..21075
DNA (996bp) protein (332aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77482.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77482.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX3_9FIRM
glycosyl transferase family 2
L3_114_000M1_scaffold_207_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21179..21592
DNA (414bp) protein (138aa)
WxcM-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX5_9FIRM
WxcM-like protein {ECO:0000313|EMBL:EFB77484.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_207_17
Roseburia sp. CAG:45, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21592..22611
DNA (1020bp) protein (340aa)
Uncharacterized protein n=1 Tax=Roseburia sp. CAG:45 RepID=R6NLN9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDC12140.1}; TaxID=1262947 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:45.;"
hypothetical protein
L3_114_000M1_scaffold_207_18
[Clostridium] sticklandii, Peptoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22601..23575
DNA (975bp) protein (325aa)
Putative uncharacterized protein n=1 Tax=Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB 10654) RepID=E3PVK5_CLOSD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH20572.1}; TaxID=499177 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptostreptococcaceae; Peptoclostridium.;" source="Clostridium sticklandii (strain ATCC 12662 / DSM 519 / JCM 1433 / NCIB; 10654).;"
L3_114_000M1_scaffold_207_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

23572..24636
DNA (1065bp) protein (355aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77486.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77486.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX7_9FIRM
family 2 glycosyl transferase
L3_114_000M1_scaffold_207_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24640..25755
DNA (1116bp) protein (372aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77487.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_207_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25752..26729
DNA (978bp) protein (326aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77488.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77488.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIX9_9FIRM
family 2 glycosyl transferase
L3_114_000M1_scaffold_207_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26914..27882
DNA (969bp) protein (323aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB77489.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB77489.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY0_9FIRM
family 2 glycosyl transferase
L3_114_000M1_scaffold_207_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

27895..28752
DNA (858bp) protein (286aa)
ABC-2 type transporter n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY1_9FIRM
Transport permease protein {ECO:0000256|RuleBase:RU361157}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
polysaccharide/polyol phosphate export systems, permease
L3_114_000M1_scaffold_207_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28765..30045
DNA (1281bp) protein (427aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY2_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77491.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type polysaccharide/polyol phosphate transport system, ATPase component
L3_114_000M1_scaffold_207_25
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

30042..30884
DNA (843bp) protein (281aa)
Glycosyltransferase family 6 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY3_9FIRM
Glycosyltransferase family 6 {ECO:0000313|EMBL:EFB77492.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
family 6 glycosyltransferase
L3_114_000M1_scaffold_207_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists


comp(30936..31943)
DNA (1008bp) protein (336aa)
tRNA N6-adenosine threonylcarbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00018957}; EC=2.3.1.234 {ECO:0000256|HAMAP-Rule:MF_01445, ECO:0000256|SAAS:SAAS00182339};; N6-L-threonylcarbamoyladenine synthase {ECO:0000256|HAMAP-Rule:MF_01445}; t(6)A37 threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; tRNA threonylcarbamoyladenosine biosynthesis protein TsaD {ECO:0000256|HAMAP-Rule:MF_01445}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
O-sialoglycoprotein endopeptidase (EC:3.4.24.57)
tRNA N6-adenosine threonylcarbamoyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY5_9FIRM
L3_114_000M1_scaffold_207_27
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(32045..34558)
DNA (2514bp) protein (838aa)
DNA polymerase {ECO:0000256|RuleBase:RU004460}; EC=2.7.7.7 {ECO:0000256|RuleBase:RU004460};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DNA polymerase I (EC:2.7.7.7)
DNA polymerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY6_9FIRM
L3_114_000M1_scaffold_207_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

34810..35784
DNA (975bp) protein (325aa)
tRNA-dihydrouridine synthase {ECO:0000256|PIRNR:PIRNR006621}; EC=1.-.-.- {ECO:0000256|PIRNR:PIRNR006621};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
tRNA-dihydrouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY7_9FIRM
tRNA-U20-dihydrouridine synthase
L3_114_000M1_scaffold_207_29
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(35881..36483)
DNA (603bp) protein (201aa)
Predicted hydrolases of HD superfamily (EC:3.1.3.5)
HD domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY8_9FIRM
HD domain protein {ECO:0000313|EMBL:EFB77497.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_207_30
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

36710..39070
DNA (2361bp) protein (787aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIY9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77498.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Bacterial membrane protein YfhO.
Displaying items 1-30 of 41 in total

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