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L3_114_000M1_scaffold_353

Search features with annotation key words

Displaying items 1-30 of 35 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_353_1
Lachnospiraceae bacterium 5_1_63FAA, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2..211)
DNA (210bp) protein (70aa)
L-ribulose 5-phosphate 4-epimerase (EC:5.1.3.4)
L-ribulose 5-phosphate 4-epimerase n=3 Tax=Clostridiales RepID=D4MW83_9FIRM
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:EFV16591.1}; TaxID=658089 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="Lachnospiraceae bacterium 5_1_63FAA.;"
L3_114_000M1_scaffold_353_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(491..2056)
DNA (1566bp) protein (522aa)
Carbohydrate kinase, FGGY family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI58_9FIRM
Carbohydrate kinase, FGGY family protein {ECO:0000313|EMBL:EFB77613.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate kinase, FGGY family protein
L3_114_000M1_scaffold_353_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

2131..2988
DNA (858bp) protein (286aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PI59_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB77614.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_353_4
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3158..4405
DNA (1248bp) protein (416aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L3M3_9FIRM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CDE81782.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_114_000M1_scaffold_353_5
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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4502..5617
DNA (1116bp) protein (372aa)
UDP-galactopyranose mutase {ECO:0000313|EMBL:EDP20144.1}; EC=5.4.99.9 {ECO:0000313|EMBL:EDP20144.1};; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
UDP-galactopyranose mutase (EC:5.4.99.9)
UDP-galactopyranose mutase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SG29_9FIRM
L3_114_000M1_scaffold_353_6
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5704..6528)
DNA (825bp) protein (275aa)
Oxidoreductase, short chain dehydrogenase/reductase family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA12_9FIRM
Oxidoreductase, short chain dehydrogenase/reductase family protein {ECO:0000313|EMBL:EEU95188.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
short-chain dehydrogenase/reductase SDR
L3_114_000M1_scaffold_353_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6525..7541)
DNA (1017bp) protein (339aa)
NAD dependent epimerase/dehydratase family protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA11_9FIRM
NAD dependent epimerase/dehydratase family protein {ECO:0000313|EMBL:EEU95187.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
NAD-dependent epimerase/dehydratase
L3_114_000M1_scaffold_353_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7863..8537
DNA (675bp) protein (225aa)
Response regulator receiver domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA09_9FIRM
Response regulator receiver domain protein {ECO:0000313|EMBL:EEU95185.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
two component transcriptional regulator
L3_114_000M1_scaffold_353_9
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8539..9606
DNA (1068bp) protein (356aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA08_9FIRM
histidine kinase
L3_114_000M1_scaffold_353_10
Coprococcus comes CAG:19, Coprococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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10573..11979
DNA (1407bp) protein (469aa)
MATE efflux family protein n=1 Tax=Coprococcus comes CAG:19 RepID=R6LE15_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:CDB85748.1}; TaxID=1263070 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Coprococcus; environmental samples.;" source="Coprococcus comes CAG:19.;"
multidrug resistance protein, MATE family
L3_114_000M1_scaffold_353_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12182..12751
DNA (570bp) protein (190aa)
Transcriptional regulator, TetR family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SB03_9FIRM
Transcriptional regulator, TetR family {ECO:0000313|EMBL:EDP21703.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Bacterial regulatory proteins, tetR family.
L3_114_000M1_scaffold_353_12
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12748..15120
DNA (2373bp) protein (791aa)
Beta-galactosidase/beta-glucuronidase (EC:3.2.1.23)
Putative beta-galactosidase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SB05_9FIRM
Putative beta-galactosidase {ECO:0000313|EMBL:EDP21704.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_114_000M1_scaffold_353_13
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15111..16496
DNA (1386bp) protein (462aa)
Glycoside/pentoside/hexuronide transporter n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H7H1_9FIRM
Glycoside/pentoside/hexuronide transporter {ECO:0000313|EMBL:EEU96114.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
sugar transporter
L3_114_000M1_scaffold_353_14
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16489..18078
DNA (1590bp) protein (530aa)
Alpha-galactosidase n=2 Tax=Faecalibacterium prausnitzii RepID=A8SB07_9FIRM
Alpha-galactosidase {ECO:0000313|EMBL:EDP21706.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Alpha-galactosidase
L3_114_000M1_scaffold_353_15
Firmicutes bacterium CAG:24, Firmicutes, Bacteria

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18241..19635
DNA (1395bp) protein (465aa)
Putative permease n=1 Tax=Firmicutes bacterium CAG:24 RepID=R5GWM6_9FIRM
Putative permease {ECO:0000313|EMBL:CCY21790.1}; TaxID=1263012 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:24.;"
uracil-xanthine permease
L3_114_000M1_scaffold_353_16
Anaerotruncus sp. CAG:390, Anaerotruncus, Clostridiales, Clostridia, Firmicutes, Bacteria

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19981..20544
DNA (564bp) protein (188aa)
Methyltransferase domain protein n=1 Tax=Anaerotruncus sp. CAG:390 RepID=R7EM70_9FIRM
Methyltransferase domain protein {ECO:0000313|EMBL:CDE03551.1}; TaxID=1262703 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Anaerotruncus; environmental samples.;" source="Anaerotruncus sp. CAG:390.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_114_000M1_scaffold_353_17
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

20548..21198
DNA (651bp) protein (217aa)
methyltransferase n=1 Tax=Ruminococcus sp. JC304 RepID=UPI00031364F7
Methyltransferase domain protein {ECO:0000313|EMBL:CDC39014.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
Methylase involved in ubiquinone/menaquinone biosynthesis
L3_114_000M1_scaffold_353_18
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21185..21961
DNA (777bp) protein (259aa)
Uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7HA91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EEU95267.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
hypothetical protein
L3_114_000M1_scaffold_353_19
Firmicutes bacterium CAG:124, Firmicutes, Bacteria

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22007..22786
DNA (780bp) protein (260aa)
Metal cation transporter ZIP family n=1 Tax=Firmicutes bacterium CAG:124 RepID=R5IU43_9FIRM
Metal cation transporter ZIP family {ECO:0000313|EMBL:CCY40256.1}; TaxID=1263002 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:124.;"
Predicted divalent heavy-metal cations transporter
L3_114_000M1_scaffold_353_20
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(22845..23756)
DNA (912bp) protein (304aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6MRZ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB88617.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
hypothetical protein
L3_114_000M1_scaffold_353_21
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

24270..25508
DNA (1239bp) protein (413aa)
Leucine-isoleucine-valine-threonine-and alanine-binding protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZSR5_9FIRM
Amino acid/amide ABC transporter substrate-binding protein, HAAT family {ECO:0000313|EMBL:EXG85579.1}; Flags: Precursor;; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein
L3_114_000M1_scaffold_353_22
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

25567..26466
DNA (900bp) protein (300aa)
Branched-chain amino acid ABC transporter permease n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZJW1_9FIRM
ABC transporter permease {ECO:0000313|EMBL:KEZ90962.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
branched-chain amino acid ABC transporter permease
L3_114_000M1_scaffold_353_23
[Clostridium] celerecrescens, Lachnoclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

26482..27477
DNA (996bp) protein (332aa)
Branched-chain amino acid ABC transporter permease protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZZE0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:KEZ90961.1}; TaxID=29354 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae.;" source="[Clostridium] celerecrescens.;"
branched-chain amino acid transporter permease livM
L3_114_000M1_scaffold_353_24

Not on your lists

27485..28276
DNA (792bp) protein (264aa)
livG; branched-chain amino acid transport ATP-binding protein livG (EC:3.6.3.31)
High-affinity branched-chain amino acid transport ATP-binding protein livG n=3 Tax=human gut metagenome RepID=K1UK27_9ZZZZ
High-affinity branched-chain amino acid transport ATP-binding protein livG {ECO:0000313|EMBL:EKC71871.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_114_000M1_scaffold_353_25
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

28269..28967
DNA (699bp) protein (233aa)
ABC transporter ATP-binding protein n=1 Tax=Firmicutes bacterium CAG:534 RepID=R6ZDD7_9FIRM
Amino acid/amide ABC transporter ATP-binding protein 2, HAAT family {ECO:0000313|EMBL:EXG85583.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
amino acid ABC transporter ATPase
L3_114_000M1_scaffold_353_26

Not on your lists

28980..29630
DNA (651bp) protein (217aa)
Cytidylate kinase n=1 Tax=human gut metagenome RepID=K1TJR5_9ZZZZ
Cytidylate kinase {ECO:0000313|EMBL:EKC59461.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_353_27
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

29655..30512
DNA (858bp) protein (286aa)
Aminotransferase class IV n=1 Tax=Clostridium saccharolyticum (strain ATCC 35040 / DSM 2544 / NRCC 2533 / WM1) RepID=D9R873_CLOSW
Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase {ECO:0000313|EMBL:EXG85585.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
class IV aminotransferase
L3_114_000M1_scaffold_353_28
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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30529..31590
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Clostridium saccharoperbutylacetonicum N1-4(HMT) RepID=M1MSU1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:EXG85586.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
hypothetical protein DUF4392
L3_114_000M1_scaffold_353_29

Not on your lists

31633..32328
DNA (696bp) protein (232aa)
Uncharacterized protein n=2 Tax=human gut metagenome RepID=K1S3S3_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC50029.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_353_30
Clostridium sp. ASBs410, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

32325..33314
DNA (990bp) protein (330aa)
Biotin-dependent carboxylase domain protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C5C7_9CLOT
Biotin-dependent carboxylase-like protein {ECO:0000313|EMBL:EXG85588.1}; TaxID=1304866 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium sp. ASBs410.;"
urea amidolyase-like protein
Displaying items 1-30 of 35 in total

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