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L3_114_000M1_scaffold_355

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Displaying 28 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_355_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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150..3707
DNA (3558bp) protein (1186aa)
Chromosome partition protein Smc n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW1_9FIRM
Chromosome partition protein Smc {ECO:0000256|HAMAP-Rule:MF_01894}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
condensin subunit Smc
L3_114_000M1_scaffold_355_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3817..4815
DNA (999bp) protein (333aa)
Signal recognition particle receptor FtsY n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPW0_9FIRM
Signal recognition particle receptor FtsY {ECO:0000256|HAMAP-Rule:MF_00920}; Short=SRP receptor {ECO:0000256|HAMAP-Rule:MF_00920};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
signal recognition particle-docking protein FtsY
L3_114_000M1_scaffold_355_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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4812..5441
DNA (630bp) protein (210aa)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
non-canonical purine NTP pyrophosphatase, rdgB/HAM1 family (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV9_9FIRM
L3_114_000M1_scaffold_355_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5603..5905
DNA (303bp) protein (101aa)
Putative RNA-binding protein, YhbY family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV8_9FIRM
Putative RNA-binding protein, YhbY family {ECO:0000313|EMBL:EFB75304.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted RNA-binding protein containing KH domain, possibly ribosomal protein
L3_114_000M1_scaffold_355_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5902..6501
DNA (600bp) protein (200aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
nicotinate (nicotinamide) nucleotide adenylyltransferase (EC:2.7.7.18)
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV7_9FIRM
L3_114_000M1_scaffold_355_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6695..7261
DNA (567bp) protein (189aa)
Nicotinate-nucleotide adenylyltransferase {ECO:0000256|SAAS:SAAS00086517}; EC=2.7.7.18 {ECO:0000256|SAAS:SAAS00086517};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Nicotinate-nucleotide adenylyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV7_9FIRM
conserved hypothetical protein TIGR00488
L3_114_000M1_scaffold_355_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7292..9208
DNA (1917bp) protein (639aa)
Cell envelope-like function transcriptional attenuator common domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV6_9FIRM
Cell envelope-like function transcriptional attenuator common domain protein {ECO:0000313|EMBL:EFB75302.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
cell envelope-related function transcriptional attenuator common domain
L3_114_000M1_scaffold_355_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9442..9819
DNA (378bp) protein (126aa)
Ribosomal silencing factor RsfS n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV5_9FIRM
Ribosomal silencing factor RsfS {ECO:0000256|HAMAP-Rule:MF_01477}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
iojap-related protein
L3_114_000M1_scaffold_355_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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9981..12524
DNA (2544bp) protein (848aa)
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
leucyl-tRNA synthetase, eubacterial and mitochondrial family (EC:6.1.1.4)
Leucine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV4_9FIRM
L3_114_000M1_scaffold_355_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12807..13751
DNA (945bp) protein (315aa)
Glycosyltransferase, group 2 family protein {ECO:0000313|EMBL:EFB75299.1}; EC=2.4.-.- {ECO:0000313|EMBL:EFB75299.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Glycosyltransferase, group 2 family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPV3_9FIRM
glycosyl transferase family protein
L3_114_000M1_scaffold_355_11

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13755..15077
DNA (1323bp) protein (441aa)
MATE efflux family protein n=2 Tax=human gut metagenome RepID=K1USB2_9ZZZZ
MATE efflux family protein {ECO:0000313|EMBL:EKC81180.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
MATE efflux family protein
L3_114_000M1_scaffold_355_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15251..18022
DNA (2772bp) protein (924aa)
Glycosyl hydrolase family 25 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY7_9FIRM
Glycosyl hydrolase family 25 {ECO:0000313|EMBL:EFB76252.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_355_13
unknown

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comp(18176..18775)
DNA (600bp) protein (200aa)

This feature has no annotations

L3_114_000M1_scaffold_355_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18776..20398
DNA (1623bp) protein (541aa)
Metallo-beta-lactamase domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLY6_9FIRM
Metallo-beta-lactamase domain protein {ECO:0000313|EMBL:EFB76251.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted exonuclease of the beta-lactamase fold involved in RNA processing
L3_114_000M1_scaffold_355_15

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20386..21729
DNA (1344bp) protein (448aa)
Membrane protein (Fragment) n=1 Tax=human gut metagenome RepID=K1UM76_9ZZZZ
Membrane protein {ECO:0000313|EMBL:EKC79210.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_114_000M1_scaffold_355_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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21713..22252
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNW5_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76250.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_355_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(22296..23534)
DNA (1239bp) protein (413aa)
GDSL-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN7_9FIRM
GDSL-like protein {ECO:0000313|EMBL:EFB76172.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Rhs element Vgr family protein
L3_114_000M1_scaffold_355_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(23826..24503)
DNA (678bp) protein (226aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76173.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L3_114_000M1_scaffold_355_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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24602..25993
DNA (1392bp) protein (464aa)
Transcriptional regulator, GntR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PNN9_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFB76174.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, GntR family
L3_114_000M1_scaffold_355_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(26515..27771)
DNA (1257bp) protein (419aa)
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
serine hydroxymethyltransferase (EC:2.1.2.1)
Serine hydroxymethyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIE8_9FIRM
L3_114_000M1_scaffold_355_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(27868..28455)
DNA (588bp) protein (196aa)
Imidazoleglycerol-phosphate dehydratase {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599}; Short=IGPD {ECO:0000256|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000256|HAMAP-Rule:MF_00076, ECO:0000256|RuleBase:RU000599};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Imidazoleglycerol-phosphate dehydratase (EC:4.2.1.19)
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIE9_9FIRM
L3_114_000M1_scaffold_355_22
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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28672..30450
DNA (1779bp) protein (593aa)
Chaperone protein DnaK n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF0_9FIRM
Chaperone protein DnaK {ECO:0000256|HAMAP-Rule:MF_00332}; HSP70 {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock 70 kDa protein {ECO:0000256|HAMAP-Rule:MF_00332}; Heat shock protein 70 {ECO:0000256|HAMAP-Rule:MF_00332}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
chaperone protein DnaK
L3_114_000M1_scaffold_355_23
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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30610..31305
DNA (696bp) protein (232aa)
Putative azaleucine resistance protein AzlC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF1_9FIRM
Putative azaleucine resistance protein AzlC {ECO:0000313|EMBL:EFB77536.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted branched-chain amino acid permease (azaleucine resistance)
L3_114_000M1_scaffold_355_24
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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31295..31627
DNA (333bp) protein (111aa)
Branched-chain amino acid transport protein AzlD n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF2_9FIRM
Branched-chain amino acid transport protein AzlD {ECO:0000313|EMBL:EFB77537.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted branched-chain amino acid permeases (azaleucine resistance)
L3_114_000M1_scaffold_355_25

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comp(31857..32600)
DNA (744bp) protein (248aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SEQ9_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC52075.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_355_26
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(32921..34297)
DNA (1377bp) protein (459aa)
Citrate synthase (EC:2.3.3.5 2.3.3.1)
Citrate synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF3_9FIRM
Citrate synthase {ECO:0000256|PIRNR:PIRNR001369}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_355_27
[Clostridium] spiroforme, Erysipelatoclostridium, Erysipelotrichales, Erysipelotrichia, Firmicutes, Bacteria

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34600..35598
DNA (999bp) protein (333aa)
NAD-dependent isocitrate dehydrogenase (EC:1.1.1.41)
Putative isocitrate dehydrogenase, NAD-dependent n=1 Tax=Clostridium spiroforme DSM 1552 RepID=B1C507_9FIRM
Putative isocitrate dehydrogenase, NAD-dependent {ECO:0000313|EMBL:EDS73751.1}; TaxID=428126 species="Bacteria; Firmicutes; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Erysipelatoclostridium.;" source="[Clostridium] spiroforme DSM 1552.;"
L3_114_000M1_scaffold_355_28
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

35844..38090
DNA (2247bp) protein (749aa)
Aconitase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIF4_9FIRM
Aconitase family protein {ECO:0000313|EMBL:EFB77539.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
aconitase family protein
Displaying 28 items

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