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L3_114_000M1_scaffold_724

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_724_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3..647
DNA (645bp) protein (215aa)
ATPase family associated with various cellular activities (AAA) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPA3_9FIRM
ATPase family associated with various cellular activities (AAA) {ECO:0000313|EMBL:EFB75599.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ATPases with chaperone activity, ATP-binding subunit
L3_114_000M1_scaffold_724_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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658..1665
DNA (1008bp) protein (336aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPA2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75598.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_724_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1868..2800
DNA (933bp) protein (311aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPA1_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB75597.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC family transcriptional regulator
L3_114_000M1_scaffold_724_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2873..3898
DNA (1026bp) protein (342aa)
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EFB75596.1}; EC=5.1.3.2 {ECO:0000313|EMBL:EFB75596.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
UDP-galactose 4-epimerase (EC:5.1.3.2)
UDP-glucose 4-epimerase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPA0_9FIRM
L3_114_000M1_scaffold_724_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4123..4896)
DNA (774bp) protein (258aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP99_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB75595.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC family transcriptional regulator
L3_114_000M1_scaffold_724_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5026..6138
DNA (1113bp) protein (371aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP98_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB75594.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_724_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6262..8154
DNA (1893bp) protein (631aa)
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PP97_9FIRM
Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 {ECO:0000313|EMBL:EFB75593.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
PTS system D-fructose-specific transporter subunit IIABC
L3_114_000M1_scaffold_724_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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8295..10046
DNA (1752bp) protein (584aa)
Uncharacterized protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPB7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75613.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_724_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10068..12410
DNA (2343bp) protein (781aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPB9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75381.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_724_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12426..13046
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ91_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77250.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_724_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13150..14448
DNA (1299bp) protein (433aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ93_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77253.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L3_114_000M1_scaffold_724_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14671..16638
DNA (1968bp) protein (656aa)
Basic membrane protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ94_9FIRM
Basic membrane protein {ECO:0000313|EMBL:EFB77254.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
nucleoside-binding protein
L3_114_000M1_scaffold_724_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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16635..17288
DNA (654bp) protein (218aa)
Ser/Thr phosphatase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ95_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFB77255.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted phosphoesterases, related to the Icc protein
L3_114_000M1_scaffold_724_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

17415..18413
DNA (999bp) protein (333aa)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00394}; EC=1.1.1.94 {ECO:0000256|HAMAP-Rule:MF_00394};; NAD(P)H-dependent glycerol-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00394}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
glycerol 3-phosphate dehydrogenase (NAD(P)+) (EC:1.1.1.94)
Glycerol-3-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ96_9FIRM
L3_114_000M1_scaffold_724_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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18425..19207
DNA (783bp) protein (261aa)
Cof-like hydrolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ97_9FIRM
Cof-like hydrolase {ECO:0000313|EMBL:EFB77257.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
HAD-type hydrolase
L3_114_000M1_scaffold_724_16
Firmicutes bacterium CAG:170, Firmicutes, Bacteria

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comp(19379..20365)
DNA (987bp) protein (329aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:170 RepID=R6LIV6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB87413.1}; TaxID=1263006 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:170.;"
Predicted transcriptional regulators
L3_114_000M1_scaffold_724_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(20546..21268)
DNA (723bp) protein (241aa)
Uracil-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780}; Short=UDG {ECO:0000256|HAMAP-Rule:MF_00148};; EC=3.2.2.27 {ECO:0000256|HAMAP-Rule:MF_00148, ECO:0000256|RuleBase:RU003780};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uracil-DNA glycosylase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN05_9FIRM
Uracil DNA glycosylase superfamily protein
L3_114_000M1_scaffold_724_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

21497..22636
DNA (1140bp) protein (380aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN04_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75939.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_724_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

22701..23576
DNA (876bp) protein (292aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN03_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75938.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_724_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(23932..24633)
DNA (702bp) protein (234aa)
Probable butyrate kinase {ECO:0000256|HAMAP-Rule:MF_00542}; Short=BK {ECO:0000256|HAMAP-Rule:MF_00542};; EC=2.7.2.7 {ECO:0000256|HAMAP-Rule:MF_00542};; Branched-chain carboxylic acid kinase {ECO:0000256|HAMAP-Rule:MF_00542}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
buk; butyrate kinase (EC:2.7.2.7)
Probable butyrate kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJ69_9FIRM
Displaying 20 items

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