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L3_114_000M1_scaffold_851

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_851_1
Eubacterium sp. CAG:248, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(141..587)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=Eubacterium sp. CAG:248 RepID=R6KVF7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDB66067.1}; TaxID=1262885 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium; environmental samples.;" source="Eubacterium sp. CAG:248.;"
hypothetical protein
L3_114_000M1_scaffold_851_2
Ruminococcus albus, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(865..1227)
DNA (363bp) protein (121aa)
Uncharacterized protein n=1 Tax=Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO 2250 / 7) RepID=E6UK90_RUMA7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU24086.1}; TaxID=697329 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus albus (strain ATCC 27210 / DSM 20455 / JCM 14654 / NCDO; 2250 / 7).;"
L3_114_000M1_scaffold_851_3
Firmicutes bacterium CAG:176, Firmicutes, Bacteria

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comp(1480..1785)
DNA (306bp) protein (102aa)
Transcriptional regulator MerR family n=1 Tax=Firmicutes bacterium CAG:176 RepID=R6D959_9FIRM
Transcriptional regulator MerR family {ECO:0000313|EMBL:CDA81504.1}; TaxID=1263007 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:176.;"
L3_114_000M1_scaffold_851_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2160..3005)
DNA (846bp) protein (282aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIT8_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB77447.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator, AraC family
L3_114_000M1_scaffold_851_5
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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3390..5594
DNA (2205bp) protein (735aa)
1,3-beta-galactosyl-N-acetylhexosamine phosphorylase n=4 Tax=Roseburia RepID=C7GFI1_9FIRM
conserved hypothetical protein TIGR02336
Uncharacterized protein {ECO:0000313|EMBL:CBL09398.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_851_6
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5676..7037
DNA (1362bp) protein (454aa)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) n=1 Tax=Roseburia intestinalis M50/1 RepID=D4KR95_9FIRM
carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter substrate-binding protein, CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CBL09397.1}; TaxID=657315 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis M50/1.;"
L3_114_000M1_scaffold_851_7
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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7159..8040
DNA (882bp) protein (294aa)
Carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-) n=4 Tax=Roseburia RepID=D4KR94_9FIRM
carbohydrate ABC transporter membrane protein 1, CUT1 family (TC 3.A.1.1.-)
Carbohydrate ABC transporter membrane protein 1 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA54777.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
L3_114_000M1_scaffold_851_8
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

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8033..8839
DNA (807bp) protein (269aa)
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6ENF7_9FIRM
Carbohydrate ABC transporter membrane protein 2 CUT1 family (TC 3.A.1.1.-) {ECO:0000313|EMBL:CDA54776.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
carbohydrate ABC transporter membrane protein 2, CUT1 family (TC 3.A.1.1.-)
L3_114_000M1_scaffold_851_9
Roseburia intestinalis, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8839..9303
DNA (465bp) protein (155aa)
Uncharacterized protein n=3 Tax=Roseburia RepID=C7GFI5_9FIRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBL11956.1}; TaxID=718255 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia.;" source="Roseburia intestinalis XB6B4.;"
L3_114_000M1_scaffold_851_10
Roseburia intestinalis CAG:13, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

9263..10543
DNA (1281bp) protein (427aa)
Uncharacterized protein n=1 Tax=Roseburia intestinalis CAG:13 RepID=R6B1A0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CDA54774.1}; TaxID=1263104 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia intestinalis CAG:13.;"
hypothetical protein
L3_114_000M1_scaffold_851_11
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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10683..11615
DNA (933bp) protein (311aa)
Kinase, PfkB family n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8H2_9FIRM
Kinase, PfkB family {ECO:0000313|EMBL:EDP22516.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Sugar kinases, ribokinase family
L3_114_000M1_scaffold_851_12
Roseburia sp. CAG:309, Roseburia, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

11803..12657
DNA (855bp) protein (285aa)
Transcriptional regulator AraC family n=1 Tax=Roseburia sp. CAG:309 RepID=R6YMK7_9FIRM
Transcriptional regulator AraC family {ECO:0000313|EMBL:CDD35050.1}; TaxID=1262945 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Roseburia; environmental samples.;" source="Roseburia sp. CAG:309.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000M1_scaffold_851_13
Eubacterium rectale, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

12722..15754
DNA (3033bp) protein (1011aa)
Putative uncharacterized protein n=1 Tax=Eubacterium rectale M104/1 RepID=D4JNC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CBK92482.1}; TaxID=657317 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium rectale M104/1.;"
Protein of unknown function (DUF2726).
L3_114_000M1_scaffold_851_14
Firmicutes bacterium CAG:65, Firmicutes, Bacteria

Not on your lists

comp(15908..17245)
DNA (1338bp) protein (446aa)
Transporter n=1 Tax=Firmicutes bacterium CAG:65 RepID=R6EBL9_9FIRM
Transporter {ECO:0000256|RuleBase:RU003732}; TaxID=1262994 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:65.;"
sodium:neurotransmitter symporter
L3_114_000M1_scaffold_851_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17249..18382)
DNA (1134bp) protein (378aa)
Ser/Thr phosphatase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE7_9FIRM
Ser/Thr phosphatase family protein {ECO:0000313|EMBL:EFB75070.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
metallophosphoesterase
L3_114_000M1_scaffold_851_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(18607..20004)
DNA (1398bp) protein (466aa)
Glutamate synthase (NADPH), homotetrameric {ECO:0000313|EMBL:EFB75071.1}; EC=1.4.1.13 {ECO:0000313|EMBL:EFB75071.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
sulfide dehydrogenase (flavoprotein) subunit SudA (EC:1.97.-.- 1.4.1.14 1.4.1.13)
Glutamate synthase (NADPH), homotetrameric n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE8_9FIRM
L3_114_000M1_scaffold_851_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(20007..20849)
DNA (843bp) protein (281aa)
sulfide dehydrogenase (flavoprotein) subunit SudB (EC:1.18.1.2 1.97.-.-)
Oxidoreductase NAD-binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQE9_9FIRM
Oxidoreductase NAD-binding domain protein {ECO:0000313|EMBL:EFB75072.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_851_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(21758..22213)
DNA (456bp) protein (152aa)
Branched-chain-amino-acid transaminase {ECO:0000313|EMBL:EFB75434.1}; EC=2.6.1.42 {ECO:0000313|EMBL:EFB75434.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
branched chain amino acid aminotransferase apoenzyme (EC:2.6.1.42)
Branched-chain-amino-acid transaminase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH2_9FIRM
Displaying 18 items

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