ggKbase home page

L3_114_000M1_scaffold_3536

Search features with annotation key words

Displaying 7 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_3536_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(150..1112)
DNA (963bp) protein (321aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:EFB76937.1}; EC=4.1.2.14 {ECO:0000313|EMBL:EFB76937.1};; EC=4.1.3.16 {ECO:0000313|EMBL:EFB76937.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Entner-Doudoroff aldolase (EC:4.1.3.16 4.1.2.14)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJI9_9FIRM
L3_114_000M1_scaffold_3536_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

1406..2167
DNA (762bp) protein (254aa)
Transcriptional regulator, IclR family, C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJJ0_9FIRM
Transcriptional regulator, IclR family, C-terminal domain protein {ECO:0000313|EMBL:EFB76938.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator IclR-like protein
L3_114_000M1_scaffold_3536_3
Flavonifractor plautii, Flavonifractor, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2490..2852)
DNA (363bp) protein (121aa)
DNA-binding helix-turn-helix protein n=2 Tax=Clostridiales RepID=U2BK82_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:KGF54640.1}; TaxID=742738 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Flavonifractor.;" source="Clostridium orbiscindens 1_3_50AFAA.;"
Predicted transcriptional regulators
L3_114_000M1_scaffold_3536_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(3004..4065)
DNA (1062bp) protein (354aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJJ1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76939.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_3536_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(4081..5490)
DNA (1410bp) protein (470aa)
MBOAT family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJJ2_9FIRM
MBOAT family protein {ECO:0000313|EMBL:EFB76940.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative membrane protein involved in D-alanine export
L3_114_000M1_scaffold_3536_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

5712..6644
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76941.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_3536_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

6654..7631
DNA (978bp) protein (326aa)
Hydrolase, alpha/beta domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJJ4_9FIRM
Hydrolase, alpha/beta domain protein {ECO:0000313|EMBL:EFB76942.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
putative hydrolase
Displaying 7 items

View Taxonomy