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L3_114_000M1_scaffold_3600

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_3600_1
unknown

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comp(310..636)
DNA (327bp) protein (109aa)

This feature has no annotations

L3_114_000M1_scaffold_3600_2
Simiduia agarivorans, Simiduia, Gammaproteobacteria, Proteobacteria, Bacteria

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986..1330
DNA (345bp) protein (115aa)
DNA-binding helix-turn-helix protein n=2 Tax=Acinetobacter RepID=D0SFW6_ACIJO
Cro/CI family transcriptional regulator
Cro/CI family transcriptional regulator {ECO:0000313|EMBL:AFU97804.1}; TaxID=1117647 species="Bacteria; Proteobacteria; Gammaproteobacteria; Simiduia.;" source="Simiduia agarivorans (strain DSM 21679 / JCM 13881 / BCRC 17597 /; SA1).;"
L3_114_000M1_scaffold_3600_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1355..1903
DNA (549bp) protein (183aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN46_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB75981.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_3600_4

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1896..2597
DNA (702bp) protein (234aa)
Uncharacterized protein (Fragment) n=1 Tax=human gut metagenome RepID=K1TML0_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC67525.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_114_000M1_scaffold_3600_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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2680..3063
DNA (384bp) protein (128aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN44_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75979.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_3600_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3214..3753
DNA (540bp) protein (180aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PN42_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB75977.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_3600_7
[Clostridium] stercorarium, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3900..4376
DNA (477bp) protein (159aa)
DNA-directed RNA polymerase n=1 Tax=Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM 8532 / NCIMB 11754) RepID=L7VML4_CLOSH
DNA-directed RNA polymerase
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGC67701.1}; TaxID=1121335 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminiclostridium.;" source="Clostridium stercorarium subsp. stercorarium (strain ATCC 35414 / DSM; 8532 / NCIMB 11754).;"
L3_114_000M1_scaffold_3600_8
unknown

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4439..5191
DNA (753bp) protein (251aa)

This feature has no annotations

L3_114_000M1_scaffold_3600_9

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comp(5284..6261)
DNA (978bp) protein (326aa)
Uncharacterized protein (Fragment) n=1 Tax=gut metagenome RepID=J9FW31_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EJW91534.1}; Flags: Fragment;; TaxID=749906 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="gut metagenome.;"
L3_114_000M1_scaffold_3600_10
unknown

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6395..7015
DNA (621bp) protein (207aa)

This feature has no annotations

L3_114_000M1_scaffold_3600_11
unknown

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comp(7074..7715)
DNA (642bp) protein (214aa)

This feature has no annotations

Displaying 11 items

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