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L3_114_000M1_scaffold_1008

Search features with annotation key words

Displaying 24 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1008_1
Faecalibacterium sp. CAG:82, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..435
DNA (435bp) protein (145aa)
Ribosomal RNA small subunit methyltransferase I {ECO:0000256|HAMAP-Rule:MF_01877}; EC=2.1.1.198 {ECO:0000256|HAMAP-Rule:MF_01877};; 16S rRNA 2'-O-ribose C1402 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01877}; rRNA (cytidine-2'-O-)-methyltransferase RsmI {ECO:0000256|HAMAP-Rule:MF_01877}; TaxID=1262898 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium; environmental samples.;" source="Faecalibacterium sp. CAG:82.;"
Ribosomal RNA small subunit methyltransferase I n=1 Tax=Faecalibacterium sp. CAG:82 RepID=R6PZ28_9FIRM
conserved hypothetical protein TIGR00096
L3_114_000M1_scaffold_1008_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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671..1156
DNA (486bp) protein (162aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Phosphodiesterase family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ43_9FIRM
phosphodiesterase, MJ0936 family
L3_114_000M1_scaffold_1008_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1153..1887
DNA (735bp) protein (245aa)
Biotin--[acetyl-CoA-carboxylase] ligase {ECO:0000313|EMBL:EFB75185.1}; EC=6.3.4.15 {ECO:0000313|EMBL:EFB75185.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
birA, biotin-[acetyl-CoA-carboxylase] ligase region (EC:6.3.4.15)
Biotin--[acetyl-CoA-carboxylase] ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQ42_9FIRM
L3_114_000M1_scaffold_1008_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2042..2653)
DNA (612bp) protein (204aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75432.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted membrane protein
L3_114_000M1_scaffold_1008_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2815..3471)
DNA (657bp) protein (219aa)
HAD hydrolase, family IA, variant 3 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PPH1_9FIRM
HAD hydrolase, family IA, variant 3 {ECO:0000313|EMBL:EFB75433.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
L3_114_000M1_scaffold_1008_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3753..4625)
DNA (873bp) protein (291aa)
Phospholipase, patatin family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW3_9FIRM
Phospholipase, patatin family {ECO:0000313|EMBL:EFB74491.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1008_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

4753..5496
DNA (744bp) protein (248aa)
3-dehydroquinate dehydratase, type I (EC:4.2.1.10)
Putative 3-dehydroquinate dehydratase, type I (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRW1_9FIRM
Putative 3-dehydroquinate dehydratase, type I {ECO:0000313|EMBL:EFB74489.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1008_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(5824..5991)
DNA (168bp) protein (56aa)
Dissimilatory sulfite reductase (Desulfoviridin), alpha and beta subunits n=2 Tax=Faecalibacterium prausnitzii RepID=D4K8W7_9FIRM
Dissimilatory sulfite reductase (desulfoviridin), alpha and beta subunits
Ferredoxin {ECO:0000313|EMBL:EDP22151.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
L3_114_000M1_scaffold_1008_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(6189..7028)
DNA (840bp) protein (280aa)
PSP1 C-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC6_9FIRM
PSP1 C-terminal domain protein {ECO:0000313|EMBL:EFB75108.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterized homolog of PSP1
L3_114_000M1_scaffold_1008_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(7312..8229)
DNA (918bp) protein (306aa)
DNA polymerase III, delta' subunit domain protein (Fragment) n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC7_9FIRM
DNA polymerase III, delta' subunit domain protein {ECO:0000313|EMBL:EFB75099.1}; Flags: Fragment;; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1008_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8229..8552)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75100.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1008_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(8589..9233)
DNA (645bp) protein (215aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQC9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75101.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Rhomboid family.
L3_114_000M1_scaffold_1008_13
Firmicutes bacterium CAG:110, Firmicutes, Bacteria

Not on your lists

9379..9888
DNA (510bp) protein (170aa)
Putative toxin-antitoxin system antitoxin component Xre family n=1 Tax=Firmicutes bacterium CAG:110 RepID=R5EPB6_9FIRM
Putative toxin-antitoxin system antitoxin component Xre family {ECO:0000313|EMBL:CCX89881.1}; TaxID=1263000 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:110.;"
hypothetical protein
L3_114_000M1_scaffold_1008_14
unknown

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10038..10259
DNA (222bp) protein (74aa)

This feature has no annotations

L3_114_000M1_scaffold_1008_15
Ruminococcus sp. 5_1_39BFAA, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

10382..10942
DNA (561bp) protein (187aa)
Uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDR9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EES76818.1}; TaxID=457412 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus.;" source="Ruminococcus sp. 5_1_39BFAA.;"
hypothetical protein
L3_114_000M1_scaffold_1008_16

Not on your lists

comp(11542..12726)
DNA (1185bp) protein (395aa)
integrase n=1 Tax=Clostridiales bacterium NK3B98 RepID=UPI0003B47423
Sitespecific recombinase XerD {ECO:0000313|EMBL:CCG05860.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
Site-specific recombinase XerD
L3_114_000M1_scaffold_1008_17

Not on your lists

comp(12851..14203)
DNA (1353bp) protein (451aa)
Rlx protein (Fragment) n=1 Tax=human gut metagenome RepID=K1SP65_9ZZZZ
Rlx protein {ECO:0000313|EMBL:EKC62457.1}; Flags: Fragment;; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_1008_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14190..14459)
DNA (270bp) protein (90aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75121.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1008_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14456..15640)
DNA (1185bp) protein (395aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75120.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1008_20

Not on your lists

comp(16392..16628)
DNA (237bp) protein (79aa)
Excisionase n=1 Tax=human gut metagenome RepID=K1TN56_9ZZZZ
Excisionase {ECO:0000313|EMBL:EKC67765.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_1008_21
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

16808..17368
DNA (561bp) protein (187aa)
DNA-binding helix-turn-helix protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PQB0_9FIRM
DNA-binding helix-turn-helix protein {ECO:0000313|EMBL:EFB75118.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Helix-turn-helix.
L3_114_000M1_scaffold_1008_22
unknown

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18247..18441
DNA (195bp) protein (65aa)

This feature has no annotations

L3_114_000M1_scaffold_1008_23

Not on your lists

comp(18748..19401)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1UKS8_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC80849.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
hypothetical protein
L3_114_000M1_scaffold_1008_24
Clostridium tetanomorphum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

19695..19904
DNA (210bp) protein (70aa)
Transposase n=1 Tax=Catonella morbi ATCC 51271 RepID=V2Y6J0_9FIRM
Transposase.
Transposase IS3/IS911 family protein {ECO:0000313|EMBL:KAJ53411.1}; TaxID=1230342 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.;" source="Clostridium tetanomorphum DSM 665.;"
Displaying 24 items

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