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L3_114_000M1_scaffold_1013

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Displaying 19 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1013_1
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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2..211
DNA (210bp) protein (70aa)
Uncharacterized protein n=1 Tax=Ruminococcaceae bacterium D16 RepID=F4X9P7_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFQ08319.1}; Flags: Fragment;; TaxID=748224 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium cf. prausnitzii KLE1255.;"
putative site-specific recombinase
L3_114_000M1_scaffold_1013_2
Clostridium sp. CAG:352, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

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533..1423
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Clostridium sp. CAG:352 RepID=R6QNH1_9CLOT
Uncharacterized protein {ECO:0000313|EMBL:CDC37340.1}; TaxID=1262798 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium; environmental samples.;" source="Clostridium sp. CAG:352.;"
hypothetical protein
L3_114_000M1_scaffold_1013_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1518..2735
DNA (1218bp) protein (406aa)
SpoIVB peptidase {ECO:0000313|EMBL:EFB76799.1}; EC=3.4.21.- {ECO:0000313|EMBL:EFB76799.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
stage IV sporulation protein B (EC:3.4.21.116)
SpoIVB peptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE1_9FIRM
L3_114_000M1_scaffold_1013_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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3016..3774
DNA (759bp) protein (253aa)
Putative sporulation transcription factor Spo0A n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE0_9FIRM
Stage 0 sporulation protein A homolog {ECO:0000256|PIRNR:PIRNR002937}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain
L3_114_000M1_scaffold_1013_5
Ruminococcus sp. CAG:353, Ruminococcus, Clostridiales, Clostridia, Firmicutes, Bacteria

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3929..5179
DNA (1251bp) protein (417aa)
nucleotide sugar dehydrogenase (EC:1.1.1.22)
Nucleotide sugar dehydrogenase n=1 Tax=Ruminococcus sp. CAG:353 RepID=R7L3M3_9FIRM
Nucleotide sugar dehydrogenase {ECO:0000313|EMBL:CDE81782.1}; TaxID=1262955 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Ruminococcus; environmental samples.;" source="Ruminococcus sp. CAG:353.;"
L3_114_000M1_scaffold_1013_6
Blautia sp. CAG:52, Blautia, Clostridiales, Clostridia, Firmicutes, Bacteria

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5670..6218
DNA (549bp) protein (183aa)
membrane protein n=1 Tax=Ruminococcus sp. JC304 RepID=UPI0002FA92A4
UPF0397 protein BN690_00027 {ECO:0000256|HAMAP-Rule:MF_01572}; TaxID=1262758 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Lachnospiraceae; Blautia; environmental samples.;" source="Blautia sp. CAG:52.;"
Predicted membrane protein
L3_114_000M1_scaffold_1013_7
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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6301..8025
DNA (1725bp) protein (575aa)
Cobalt ABC transporter, ATP-binding protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4R3_9FIRM
Cobalt ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EEU97099.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ATPase components of various ABC-type transport systems, contain duplicated ATPase
L3_114_000M1_scaffold_1013_8
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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8015..8845
DNA (831bp) protein (277aa)
Cobalt transport protein n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4R2_9FIRM
Cobalt transport protein {ECO:0000313|EMBL:EEU97098.1}; TaxID=411483 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii A2-165.;"
ABC-type cobalt transport system, permease component CbiQ and related transporters
L3_114_000M1_scaffold_1013_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(9093..10994)
DNA (1902bp) protein (634aa)
Chaperone protein HtpG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME7_9FIRM
Chaperone protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505, ECO:0000256|SAAS:SAAS00218406}; Heat shock protein HtpG {ECO:0000256|HAMAP-Rule:MF_00505}; High temperature protein G {ECO:0000256|HAMAP-Rule:MF_00505}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Molecular chaperone, HSP90 family
L3_114_000M1_scaffold_1013_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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11332..12141
DNA (810bp) protein (270aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PME9_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75734.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Esterase/lipase
L3_114_000M1_scaffold_1013_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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12158..13144
DNA (987bp) protein (329aa)
4-phosphoerythronate dehydrogenase {ECO:0000313|EMBL:EFB75735.1}; EC=1.1.1.290 {ECO:0000313|EMBL:EFB75735.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
4-phosphoerythronate dehydrogenase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMF0_9FIRM
lactate dehydrogenase-like oxidoreductase
L3_114_000M1_scaffold_1013_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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13144..13824
DNA (681bp) protein (227aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMF1_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75736.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Uncharacterised protein family (UPF0153).
L3_114_000M1_scaffold_1013_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14190..14933)
DNA (744bp) protein (248aa)
DnaJ domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ5_9FIRM
DnaJ domain protein {ECO:0000313|EMBL:EFB75780.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
DnaJ-class molecular chaperone with C-terminal Zn finger domain
L3_114_000M1_scaffold_1013_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14926..15780)
DNA (855bp) protein (285aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ4_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75779.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1013_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15787..16203)
DNA (417bp) protein (139aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ3_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB75778.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1013_16
Firmicutes bacterium CAG:103, Firmicutes, Bacteria

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comp(16292..17197)
DNA (906bp) protein (302aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:103 RepID=R5AUX2_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCX46798.1}; TaxID=1262999 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:103.;"
Restriction endonuclease
L3_114_000M1_scaffold_1013_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(17216..18577)
DNA (1362bp) protein (454aa)
23S rRNA (Uracil-5-)-methyltransferase RumA {ECO:0000313|EMBL:EFB75777.1}; EC=2.1.1.- {ECO:0000313|EMBL:EFB75777.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
23S rRNA m(5)U-1939 methyltransferase (EC:2.1.1.-)
23S rRNA (Uracil-5-)-methyltransferase RumA n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ2_9FIRM
L3_114_000M1_scaffold_1013_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(18608..19477)
DNA (870bp) protein (290aa)
Transcriptional regulator, AraC family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMJ1_9FIRM
Transcriptional regulator, AraC family {ECO:0000313|EMBL:EFB75775.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
AraC-type DNA-binding domain-containing proteins
L3_114_000M1_scaffold_1013_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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19697..19858
DNA (162bp) protein (54aa)
GHMP kinase, N-terminal domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PMI9_9FIRM
GHMP kinase, N-terminal domain protein {ECO:0000313|EMBL:EFB75774.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Displaying 19 items

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