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L3_114_000M1_scaffold_1121

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1121_1
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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1..543
DNA (543bp) protein (181aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNAse R (EC:3.1.-.-)
Ribonuclease R n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PLE7_9FIRM
L3_114_000M1_scaffold_1121_2
Eubacterium plexicaudatum, Eubacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(604..1959)
DNA (1356bp) protein (452aa)
MATE efflux family protein n=1 Tax=Eubacterium plexicaudatum ASF492 RepID=N2A609_9FIRM
MATE efflux family protein {ECO:0000313|EMBL:EMZ21500.1}; TaxID=1235802 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Eubacteriaceae; Eubacterium.;" source="Eubacterium plexicaudatum ASF492.;"
putative efflux protein, MATE family
L3_114_000M1_scaffold_1121_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(2211..3428)
DNA (1218bp) protein (406aa)
Alcohol dehydrogenase, iron-dependent {ECO:0000313|EMBL:EFB77036.1}; EC=1.1.1.1 {ECO:0000313|EMBL:EFB77036.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Alcohol dehydrogenase, iron-dependent n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT8_9FIRM
Alcohol dehydrogenase, class IV
L3_114_000M1_scaffold_1121_4
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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3595..5421
DNA (1827bp) protein (609aa)
Penicillin-binding protein, transpeptidase domain protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SD49_9FIRM
Penicillin-binding protein, transpeptidase domain protein {ECO:0000313|EMBL:EDP20796.1}; TaxID=411485 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii M21/2.;"
Cell division protein FtsI/penicillin-binding protein 2
L3_114_000M1_scaffold_1121_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5652..6173
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK47_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77145.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
marR2; regulatory protein MarR
L3_114_000M1_scaffold_1121_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6167..7924
DNA (1758bp) protein (586aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK48_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77146.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_1121_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7924..9852
DNA (1929bp) protein (643aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK49_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77147.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC-type multidrug transport system, ATPase and permease components
L3_114_000M1_scaffold_1121_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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10102..10968
DNA (867bp) protein (289aa)
Ricin-type beta-trefoil lectin domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK51_9FIRM
Ricin-type beta-trefoil lectin domain protein {ECO:0000313|EMBL:EFB77149.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ricin-type beta-trefoil lectin domain.
L3_114_000M1_scaffold_1121_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(11222..13930)
DNA (2709bp) protein (903aa)
Valine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00026840}; EC=6.1.1.9 {ECO:0000256|HAMAP-Rule:MF_02004, ECO:0000256|SAAS:SAAS00105779};; Valyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_02004}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
valyl-tRNA synthetase (EC:6.1.1.9)
Valine--tRNA ligase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK53_9FIRM
L3_114_000M1_scaffold_1121_10
Faecalibacterium prausnitzii, Faecalibacterium, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(14351..14698)
DNA (348bp) protein (116aa)
Arsenate reductase and related proteins, glutaredoxin family n=1 Tax=Faecalibacterium prausnitzii L2-6 RepID=D4K0Z5_9FIRM
Arsenate reductase and related proteins, glutaredoxin family
Arsenate reductase and related proteins, glutaredoxin family {ECO:0000313|EMBL:CBK99944.1}; TaxID=718252 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Faecalibacterium.;" source="Faecalibacterium prausnitzii L2-6.;"
L3_114_000M1_scaffold_1121_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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14867..15496
DNA (630bp) protein (210aa)
VanZ-like protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK54_9FIRM
VanZ-like protein {ECO:0000313|EMBL:EFB77152.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Predicted integral membrane protein
L3_114_000M1_scaffold_1121_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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15493..16791
DNA (1299bp) protein (433aa)
bifunctional folylpolyglutamate synthase/dihydrofolate synthase (EC:6.3.2.17)
Bifunctional protein FolC n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK55_9FIRM
Bifunctional protein FolC {ECO:0000313|EMBL:EFB77153.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1121_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17001..17297
DNA (297bp) protein (99aa)
Anti-sigma factor antagonist n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK56_9FIRM
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anti-anti-sigma factor
L3_114_000M1_scaffold_1121_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17314..17748
DNA (435bp) protein (145aa)
Anti-sigma F factor {ECO:0000313|EMBL:EFB77155.1}; EC=2.7.11.1 {ECO:0000313|EMBL:EFB77155.1};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
anti-sigma F factor (EC:2.7.11.1)
Anti-sigma F factor n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK57_9FIRM
L3_114_000M1_scaffold_1121_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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17780..18463
DNA (684bp) protein (228aa)
Sigma-70 region 2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PK58_9FIRM
Sigma-70 region 2 {ECO:0000313|EMBL:EFB77156.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
RNA polymerase sigma factor, sigma-70 family
Displaying 15 items

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