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L3_114_000M1_scaffold_1181

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
L3_114_000M1_scaffold_1181_1

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comp(3..80)
DNA (78bp) protein (26aa)
Uncharacterized protein n=1 Tax=human gut metagenome RepID=K1SH74_9ZZZZ
Uncharacterized protein {ECO:0000313|EMBL:EKC46711.1}; TaxID=408170 species="unclassified sequences; metagenomes; organismal metagenomes.;" source="human gut metagenome.;"
L3_114_000M1_scaffold_1181_2
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(586..1977)
DNA (1392bp) protein (464aa)
M18 family aminopeptidase {ECO:0000256|RuleBase:RU004387}; EC=3.4.11.- {ECO:0000256|RuleBase:RU004387};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Aspartyl aminopeptidase (EC:3.4.11.-)
M18 family aminopeptidase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX1_9FIRM
L3_114_000M1_scaffold_1181_3
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(1998..2585)
DNA (588bp) protein (196aa)
Transglycosylase SLT domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX2_9FIRM
Transglycosylase SLT domain protein {ECO:0000313|EMBL:EFB76630.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
L3_114_000M1_scaffold_1181_4
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(2549..3184)
DNA (636bp) protein (212aa)
Dephospho-CoA kinase {ECO:0000256|HAMAP-Rule:MF_00376}; EC=2.7.1.24 {ECO:0000256|HAMAP-Rule:MF_00376};; Dephosphocoenzyme A kinase {ECO:0000256|HAMAP-Rule:MF_00376}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
dephospho-CoA kinase (EC:2.7.1.24)
Dephospho-CoA kinase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX3_9FIRM
L3_114_000M1_scaffold_1181_5
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(3181..4200)
DNA (1020bp) protein (340aa)
Threonylcarbamoyl-AMP synthase {ECO:0000256|PIRNR:PIRNR004930}; Short=TC-AMP synthase {ECO:0000256|PIRNR:PIRNR004930};; EC=2.7.7.87 {ECO:0000256|PIRNR:PIRNR004930};; L-threonylcarbamoyladenylate synthase {ECO:0000256|PIRNR:PIRNR004930}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Sua5/YciO/YrdC/YwlC family protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX4_9FIRM
translation factor SUA5
L3_114_000M1_scaffold_1181_6
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(4205..5293)
DNA (1089bp) protein (363aa)
Peptide chain release factor 1 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX5_9FIRM
Peptide chain release factor 1 {ECO:0000256|HAMAP-Rule:MF_00093}; Short=RF-1 {ECO:0000256|HAMAP-Rule:MF_00093};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
peptide chain release factor 1
L3_114_000M1_scaffold_1181_7
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(5421..5609)
DNA (189bp) protein (63aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX6_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76634.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1181_8
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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5746..6654
DNA (909bp) protein (303aa)
S1 RNA binding domain protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX7_9FIRM
S1 RNA binding domain protein {ECO:0000313|EMBL:EFB76635.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Ribosomal protein S1
L3_114_000M1_scaffold_1181_9
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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6761..7336
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB76636.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1181_10
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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7468..7839
DNA (372bp) protein (124aa)
Transcriptional regulator, GntR family n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT2_9FIRM
Transcriptional regulator, GntR family {ECO:0000313|EMBL:EFB77030.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
transcriptional regulator
L3_114_000M1_scaffold_1181_11
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

7843..8703
DNA (861bp) protein (287aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT1_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB77029.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
ABC transporter
L3_114_000M1_scaffold_1181_12
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

8700..9362
DNA (663bp) protein (221aa)
Uncharacterized protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PJT0_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EFB77028.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
hypothetical protein
L3_114_000M1_scaffold_1181_13
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(9516..10235)
DNA (720bp) protein (240aa)
Fe(3+)-transporting ATPase (EC:3.6.3.30)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKX9_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76637.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
L3_114_000M1_scaffold_1181_14
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(10238..10999)
DNA (762bp) protein (254aa)
ABC transporter, ATP-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKY0_9FIRM
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EFB76638.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
amino acid/amide ABC transporter ATP-binding protein 1, HAAT family (TC 3.A.1.4.-)
L3_114_000M1_scaffold_1181_15
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(11000..12085)
DNA (1086bp) protein (362aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKY1_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB76639.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
inner-membrane translocator
L3_114_000M1_scaffold_1181_16
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(12096..12980)
DNA (885bp) protein (295aa)
Branched-chain amino acid ABC transporter, permease protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKY2_9FIRM
Branched-chain amino acid ABC transporter, permease protein {ECO:0000313|EMBL:EFB76640.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
inner-membrane translocator
L3_114_000M1_scaffold_1181_17
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(13222..14445)
DNA (1224bp) protein (408aa)
Receptor family ligand-binding protein n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKY4_9FIRM
Receptor family ligand-binding protein {ECO:0000313|EMBL:EFB76642.1}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Extracellular ligand-binding receptor
L3_114_000M1_scaffold_1181_18
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

14768..15319
DNA (552bp) protein (184aa)
Xanthine phosphoribosyltransferase {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502}; Short=XPRTase {ECO:0000256|HAMAP-Rule:MF_01184};; EC=2.4.2.22 {ECO:0000256|HAMAP-Rule:MF_01184, ECO:0000256|SAAS:SAAS00064502};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
Xanthine phosphoribosyltransferase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKY5_9FIRM
xanthine phosphoribosyltransferase
L3_114_000M1_scaffold_1181_19
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(15551..16468)
DNA (918bp) protein (306aa)
Elongation factor Ts n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP1_9FIRM
Elongation factor Ts {ECO:0000256|HAMAP-Rule:MF_00050, ECO:0000256|RuleBase:RU000642}; Short=EF-Ts {ECO:0000256|HAMAP-Rule:MF_00050};; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
translation elongation factor Ts (EF-Ts)
L3_114_000M1_scaffold_1181_20
Subdoligranulum variabile, Subdoligranulum, Clostridiales, Clostridia, Firmicutes, Bacteria

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comp(16505..17224)
DNA (720bp) protein (240aa)
30S ribosomal protein S2 n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PKP0_9FIRM
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291}; TaxID=411471 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcaceae; Subdoligranulum.;" source="Subdoligranulum variabile DSM 15176.;"
SSU ribosomal protein S2P
L3_114_000M1_scaffold_1181_21
unknown

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17487..17831
DNA (345bp) protein (115aa)

This feature has no annotations

Displaying 21 items

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